Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele17g1024 ATGATTAGTGCATCCAATCAATCAGGCCGCCGTATTCTGTCATTCCCGGCGGTTCATCCCTGCGAAAGCGTGTCTCCGGCCGCCCTTCTCGCTTCTCTCATCTCTCTTTCTCAGGCTATATGCAGCTTCCAATCCAAGTTCTTCCCAACTCAACGTCGAAACTCGCGAGAAATAATGCGCCAGCTCGGTATCATCCTTCTCTTCCTCGATGAAATTCGAGATCGTGGTGTTCCAATAAGCGACTCCGTTGCTCTCTGCTTCTCCGAACTTCACCTCTGTCTCCAAAAAATTCACTTCTTACTTTCGGATTGTACTCGTGAAGGTGCTCGGCTATGGATTCTAATGAAATCGGAACACGTCGCCACTCAATTCAGGGTTCTGACTCGCGCGTTGGCCACTGCTCTTGACGTTTTGCCTCTGAGTAGCATCGAGATTTGCGACGAAGTGAAAGAGGTGGTTGAATTAGTAGCCAAGCAAGCTCAAAAAGTGAAGCTTGAATTGGACCTCCACGATGAACTCGCCGTCAAGCAAGTCCTTTCAGTTTTGTATCAGTTCGAGAGAGGAATCGAACCCAACTTGAGTATCATGAAGCGAACCTTGAACTACTTGGGAATCAAAACTTGGAATGATTGCAACATAGAGATTAAATTCTTGGAAGATGAAGTCAACTTCAACTGCTCCGAATGTGACGAGAGGGAGGTTCCTTTTCTGAGTAGTTTAGTCGGATATTTGTGCTATTGCAGGGTAGTGATATTCGAAACACTGGATTTTCAACAAACCGCCACTGATCCATCGGAGACAAGGTGTAGCACGGAGATGATTAACTTCATAAACCCACAAGACTTTCGATGTCCGATCTCTTTACAACTCATGACCGATCCTGTGACTGTATCAACTGGTCAAACGTACGATCGAGCATCCATTCAGAAATGGCTCAAAGCTGGAAACAGGACATGCCCGAAAACGGGGGAGAAGCTCACAAACACAGAGCTCGTCCCGAACACGACCCTCAGAAAGCTAATCCTGAAGTTCTGTGCCGAACATGGAGTTTCCGCCGCCAAGTCCGGTCACCGGAGTCGTGACATAACAAGAACCATCGTCCCCGGTAGTACAGCTTCAGCACACGCCATGCAATTTCTTTCATGGTTCATTGCAAGGAGGCTTGTGTTCGGAACAGATGAGCAGAAAAACAAAGCAGCTTACGAAATTCGTGTGCTTGCAAGATCCAACATTTTCAACAGAGTATGTTTGATTGAAGTTGGAACAGTCCCTTCATTACTAAATCTGTTAGGCACGAACGATAAATCAACGCAAGAGAACGCAATCTCTGCTCTTCTGAAGCTGGCAAAGCATACCAACGGACAGGAAACTATAATGGAAAGTGAGGGGTTAACACCAATCCTTATGATTCTCAAGAATGGAATTACTTTGGAAGCTCGTCAGACCGCAGCTGCAATTATATTCTACCTTTCTTCCACTAGAGAGAACAGGAAAATAATCGGAGAAAACCCAGAAGCAATCCCAGCTTTGGTAGAACTAATCAAGGAAGAAACAACAGCCTTGGGGAAAAAGAACGCCATAGTCGCCATTTTCGGGCTTCTCTTGCTTCCTCATAATCATCAGAAAGTGCTTGAAGCCAACACTGTTCCAGTTCTAGTTAGTATGTTAGCTTCGTCGGAAAAATCCGACCTCACCACAGATTGCTTAGCGGTTCTTACGGCGTTGGCGGAGAACGAGGAAGGAGCAAAAGCTATGTCAAAAGCTTGTGCTTTGCCTGTGATCGTTGGGATGTTGCAGACAGTAACATGGAGAACAGGGAAAGAACACTGTGTGGCAATTTTGATGTCGCTGTGTATGCATGTCGGAGAAGAGGTGGTGAGTGTTCTGGCGAGGGATCCTTCGTTGATGCCATGGCTTTACTCTCTGATCACCGATGGTACTTCTCATGCGGCCAAGAAGGCGCGTTCTCTGATCAAAGTTCTTCATGAATTCAACGACACAAGAACTTCTCAGTGGCTTAGTTCGTCGGTGGTGCCACAACGATCCCTTCACATTTGGTGA 2061 0.4643 MISASNQSGRRILSFPAVHPCESVSPAALLASLISLSQAICSFQSKFFPTQRRNSREIMRQLGIILLFLDEIRDRGVPISDSVALCFSELHLCLQKIHFLLSDCTREGARLWILMKSEHVATQFRVLTRALATALDVLPLSSIEICDEVKEVVELVAKQAQKVKLELDLHDELAVKQVLSVLYQFERGIEPNLSIMKRTLNYLGIKTWNDCNIEIKFLEDEVNFNCSECDEREVPFLSSLVGYLCYCRVVIFETLDFQQTATDPSETRCSTEMINFINPQDFRCPISLQLMTDPVTVSTGQTYDRASIQKWLKAGNRTCPKTGEKLTNTELVPNTTLRKLILKFCAEHGVSAAKSGHRSRDITRTIVPGSTASAHAMQFLSWFIARRLVFGTDEQKNKAAYEIRVLARSNIFNRVCLIEVGTVPSLLNLLGTNDKSTQENAISALLKLAKHTNGQETIMESEGLTPILMILKNGITLEARQTAAAIIFYLSSTRENRKIIGENPEAIPALVELIKEETTALGKKNAIVAIFGLLLLPHNHQKVLEANTVPVLVSMLASSEKSDLTTDCLAVLTALAENEEGAKAMSKACALPVIVGMLQTVTWRTGKEHCVAILMSLCMHVGEEVVSVLARDPSLMPWLYSLITDGTSHAAKKARSLIKVLHEFNDTRTSQWLSSSVVPQRSLHIW 686
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele17g1024 686 SUPERFAMILY RING/U-box 279 351 - -
Lele17g1024 686 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 421 463 IPR000225 GO:0005515
Lele17g1024 686 CDD RING-Ubox_PUB 282 324 IPR045210 -
Lele17g1024 686 SUPERFAMILY ARM repeat 394 662 IPR016024 -
Lele17g1024 686 SMART Ubox_2 281 344 IPR003613 GO:0004842|GO:0016567
Lele17g1024 686 PANTHER U BOX DOMAIN-CONTAINING 78 661 - -
Lele17g1024 686 Pfam U-box domain 279 348 IPR003613 GO:0004842|GO:0016567
Lele17g1024 686 Gene3D - 384 527 IPR011989 -
Lele17g1024 686 SMART arm_5 409 450 IPR000225 GO:0005515
Lele17g1024 686 SMART arm_5 452 492 IPR000225 GO:0005515
Lele17g1024 686 SMART arm_5 493 535 IPR000225 GO:0005515
Lele17g1024 686 SMART arm_5 536 577 IPR000225 GO:0005515
Lele17g1024 686 FunFam RING-type E3 ubiquitin transferase 358 672 - -
Lele17g1024 686 Pfam Armadillo/beta-catenin-like repeat 413 449 IPR000225 GO:0005515
Lele17g1024 686 Gene3D - 528 675 IPR011989 -
Lele17g1024 686 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 278 353 IPR013083 -
Lele17g1024 686 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 547 590 IPR000225 GO:0005515
Lele17g1024 686 ProSiteProfiles U-box domain profile. 277 351 IPR003613 GO:0004842|GO:0016567
Lele17g1024 686 FunFam RING-type E3 ubiquitin transferase 278 350 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele17g1024 Lele-ChrLele17 20922336 20924396 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele17g1024 1 686 U-box Gene Family AT1G60190 38.307 1.41e-166 492