Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele17g1014 ATGTTGCTCTTTTCCCCTGCGACCTCACACCACCCTTCTCCTTCTTCTCCTTCCTCCTCCTCTCTGTGCTGCTCTGATTCCTTCATGTCGAACAAGAGGCGTCCCGATGATGGCAAGCCAAAATCCGAGAGTGGCAGTCCCGACGATAAGCGAAGAAAGCTAAAACAATGGATTTTCCACGTGATTCTAAGTGTGGTTCGTGAGGTGATGAAGTTGCATTCAGTTGGGCATCTGCTGGAACCAATTTTAGAGCCCTTGATTCGCCGAGTGGTTAAGGAGGAAGTTGAATTGGCCTTAAGGAAGCATATAGCCAACCTGAGACGGACATGTGGGAAGGAAATGCATGCTTTCGGATCGAGAAACTTGCAGCTGCAATTCGAAAACAACATATGTCTTCCTGTCTTTACTGGAGCTCGAATTGAAGGAGAGGACGGATCCAACTTAAGGGTGTGTTTAGTTGATTCCGAGAAGGGTGAAGTTGTTAGTTCAGGACCTGAATCCTCAGCAAAGGTGGAAATTGTAGTCCTTGAAGGTGATTTTGAAGACGAAAGTGACTTGTGGTTCACAGAAGATTTCAAAAACAACATTGTAAGAGAAAGAGAAGGAAAAAAGGCCCTTCTTATGGGAGATGTAGTTTTGCATCTCAAAGATGGGATTGGTATGGTGGGGGAAATTTTGTTCACCGATAATTCAAGTTGGACAAGGAGCCGTAGGTTTAGGCTTGGGGTTAGAGCTGTTGACAACTTCGATGGAATTAGAATAAGAGAAGCAAAGACCGAGTCATTTATTGTCAGAGATCATCGAGGAGAATTGTACAAGAAACACCACCCTCCTAATTTGTTTGATGAAGTTTGGAGATTGGAAAAGATTGGAAAGGATGGAGCTTTTCACAGGCGTTTGAGCAGAGAAAAGATCAGTACAGTGAAGGATTTTCTCACACTCCTCAACCTAGACCCAACAAAGCTACGCAGTATACTAGGCACGGGTATGTCTGCAAAAATGTGGGAAGTAACAGTGGAGCATGCTAAAAAATGTGTACTTGATAGCAGGAGATACTTGTACTTCCCTTCTGATTCTCAGAATAAAACTGGTATTGTCTTCAATGCTGTGGGACAACTGACAGGGATTCTCTGTGAAGGCCAGTATCTCACTATGGATCAGCTCTCTGAAGCAGAAAAGGTTGAATTTCAGTTGTCTGTAATTTCTGCATACAAGCAAGGGGATAGCGTGGCTGCTTTTGAGGATGAGGCCTCTCTAATAGATAACTCTTCAAACTTAGCTAATGCAATTTACTCGCTTAGCTCGCTTAAGACTGAGGGATCGAGTGACAATAAGACTTTGGCTCCTCAAAAAACTGGTGGATTTGATTACACACAAGCGAGTACCTCGTCGCCAGATATCATGTCATCCCTGTATTCTGTTGGTGGGACTAGTAGTTTTGATGACTATGGCTTGGCCAGTTTTGAAAGCTTGGGGCTTAGATATGATCAAGCTCGTGGTTTTCCAGTTCAAGTCACTAACTCTTTAATGACTGAAACAGACCCAATGGCACACCCTTTTGGAGATGATATGCAATTCTTTGATCCTACTGATCTTCAGTCTCATTGCAATATTCTGGATTCACAGGCAGATTTGCAGAGTGCTGTTGATGGCTTTATGCTTGCCCGTTCCACAGCATTGGCCATGGGTCAAGCTCAGAGGAGATGGAGAAAACTGTTCAATGTCCTGAAATGGTTCATGACCCGTTTTCTTAAGCTCAGCTCCTCCGTCTCGGAATATCGGAAGTTCGGAACTCTGAAATCGAATCAAATCGAGGCGAAGTGCAACTATGGCGTTCTTCTTGAACAAACCAGGGATTGCTTCCCATTTCCGATCTCATTCCCAGGCCAAGTACCCCCTGAACTTTTGGCTGAGGATCCATCTCTGAAGCCATTCAAATCGTATAAAAAGAGCATTTCACGGATTAAAAGAATTGGTGATGTTCTAACAATCGTTGTTGTTGCTGGGAAGATTTCTTTGCTCGTGTTTATGAAAAGAGTTGGAAAATTTCAGCTTGTTCTAATTTTTAATGGATATGGGAGTTCTCAATCATTGTCCAATCATGATAAACTTGAGTCTTTGATGTTGACGTTCGCATGGTCAGAAACTGATTCCATGGTATCGAGAACTCATGAATGTGCATACACTAGTGCATCTTATAATTTTGAGATGGCAACATTTGCAGGCACTACCCAGAAATGTAAGGCCTGTGAGAAGACAGTTTATTTGGTTGATCAGCTTACTGCTGACAACAAAATTTACCACAGATTTTGCTTCAGATGTCACCACTGCAAGGGTACCCTCAAGCTGAGTAATTATTGTTCCTTTGAGGGAGTTTTATACTGCAAGCCTCATTATGATCAACTCTTGAAGAAGACTGGAAGCTTACAAAAAAGTTTTGAAGGTATTCCGAGAATTGCTAGAGTTATCAGGTCTGCTGATCAGGTACAGACCAATGGCAAGGTTTCTAGATTATTTGTTGGAACTCAGGACAAGTGTGTTGCTTGCAACAAGACAGCCTACCCAATCGAAAAGGTGGCCGTTGACGGAAAATCTTACCACAAGAGTTGTTTCAGATGCTCCCATGGAGGATGTTTGATCAGCCCTTCTAACTATGTTGCCCATGAACACCGTCTCTACTGCAGACACCACCATACTCAGCTCTTCAAGCAGAAGGGTAACTTCAGTCAACTTGACCGCCATGAAAACCAAACTCTACATGAAAATACAAAACAAAATGAAAATGAAAATGTCCAGGAGGTCCCTGAGAACACAACCACCGACTAG 2826 0.4306 MLLFSPATSHHPSPSSPSSSSLCCSDSFMSNKRRPDDGKPKSESGSPDDKRRKLKQWIFHVILSVVREVMKLHSVGHLLEPILEPLIRRVVKEEVELALRKHIANLRRTCGKEMHAFGSRNLQLQFENNICLPVFTGARIEGEDGSNLRVCLVDSEKGEVVSSGPESSAKVEIVVLEGDFEDESDLWFTEDFKNNIVREREGKKALLMGDVVLHLKDGIGMVGEILFTDNSSWTRSRRFRLGVRAVDNFDGIRIREAKTESFIVRDHRGELYKKHHPPNLFDEVWRLEKIGKDGAFHRRLSREKISTVKDFLTLLNLDPTKLRSILGTGMSAKMWEVTVEHAKKCVLDSRRYLYFPSDSQNKTGIVFNAVGQLTGILCEGQYLTMDQLSEAEKVEFQLSVISAYKQGDSVAAFEDEASLIDNSSNLANAIYSLSSLKTEGSSDNKTLAPQKTGGFDYTQASTSSPDIMSSLYSVGGTSSFDDYGLASFESLGLRYDQARGFPVQVTNSLMTETDPMAHPFGDDMQFFDPTDLQSHCNILDSQADLQSAVDGFMLARSTALAMGQAQRRWRKLFNVLKWFMTRFLKLSSSVSEYRKFGTLKSNQIEAKCNYGVLLEQTRDCFPFPISFPGQVPPELLAEDPSLKPFKSYKKSISRIKRIGDVLTIVVVAGKISLLVFMKRVGKFQLVLIFNGYGSSQSLSNHDKLESLMLTFAWSETDSMVSRTHECAYTSASYNFEMATFAGTTQKCKACEKTVYLVDQLTADNKIYHRFCFRCHHCKGTLKLSNYCSFEGVLYCKPHYDQLLKKTGSLQKSFEGIPRIARVIRSADQVQTNGKVSRLFVGTQDKCVACNKTAYPIEKVAVDGKSYHKSCFRCSHGGCLISPSNYVAHEHRLYCRHHHTQLFKQKGNFSQLDRHENQTLHENTKQNENENVQEVPENTTTD 941
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele17g1014 941 ProSiteProfiles LIM domain profile. 745 805 IPR001781 -
Lele17g1014 941 CDD LIM2_SF3 846 906 - -
Lele17g1014 941 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 838 871 - -
Lele17g1014 941 CDD LIM1_SF3 743 805 - -
Lele17g1014 941 FunFam LIM domain and actin-binding 1 840 910 - -
Lele17g1014 941 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 739 772 - -
Lele17g1014 941 MobiDBLite consensus disorder prediction 923 941 - -
Lele17g1014 941 ProSiteProfiles LIM domain profile. 844 904 IPR001781 -
Lele17g1014 941 FunFam LIM domain and actin-binding 1 741 811 - -
Lele17g1014 941 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 872 910 - -
Lele17g1014 941 MobiDBLite consensus disorder prediction 8 28 - -
Lele17g1014 941 SMART lim_4 746 798 IPR001781 -
Lele17g1014 941 SMART lim_4 845 897 IPR001781 -
Lele17g1014 941 Pfam Calmodulin binding protein C-terminal domain 351 411 IPR046829 -
Lele17g1014 941 Pfam Calmodulin binding protein-like N-terminal domain 122 267 IPR046831 -
Lele17g1014 941 MobiDBLite consensus disorder prediction 30 49 - -
Lele17g1014 941 MobiDBLite consensus disorder prediction 1 49 - -
Lele17g1014 941 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 773 813 - -
Lele17g1014 941 Pfam Calmodulin binding protein central domain 280 345 IPR046830 -
Lele17g1014 941 Gene3D Cysteine Rich Protein 741 811 - -
Lele17g1014 941 Gene3D Cysteine Rich Protein 840 910 - -
Lele17g1014 941 Pfam LIM domain 846 901 IPR001781 -
Lele17g1014 941 Pfam LIM domain 747 800 IPR001781 -
Lele17g1014 941 PANTHER OS02G0177800 PROTEIN 47 480 IPR012416 GO:0005516
Lele17g1014 941 MobiDBLite consensus disorder prediction 919 941 - -
Lele17g1014 941 ProSitePatterns LIM zinc-binding domain signature. 747 781 IPR001781 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele17g1014 Lele-ChrLele17 20858381 20869105 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele17g1014 29 393 Calmodulin-binding Proteins AT5G62570 62.466 2.60e-157 465
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LIM Lele17g1014 Calmodulin_bind 4.2e-117 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele17g1014 17 20858381 20869105 Lele19g0542 19 3140233 3141699 hybridization
Lele17g1014 17 20858381 20869105 Lele20g0909 20 15435005 15437124 hybridization