Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele17g1013 ATGGGCGGCAATGGCAGGCCCAGGTGGAAAATCTCTTTCCATCGTAATCCCTCAAGCTCCAAGCTCCAATCACAAGAGCCCCCCGTCGAGTTTCTATGCCCAATTTCTGGGTCTCTGATAGCTGAACCCGTCGTAGTCGCTTCCGGTCAGACTTTTGAATCGATTTCTGTGCAAGTCTGCAGAGACTTGTGTTTCTCCCCAAAGCTTGAAGACGGGTCCACACCTGATTTCTCCGCGGCGATTCCGAATTTGGCTCTCAAATCCACCATATCCAATTGGTGCGTTAAATCCCGTGTAGAGAACCCTCGCCCGCCAGAGTATAGCGCCGTCGAGAGGATCGTCCGTACAGCTATGGCGTCTCCGCGCGAAAATCAAGCGTCAGGTTTAAGGGCTTCGGATAGGGAATTGCTCATGGCCGTGCCTGATAATCCACCGGTCATTTTCTCTCACGCCGCCACGGAGTTGGGTCCCCGGGTCAACCCGTTCAAAACGAGTTCGTCCGAGTCGGCTATCGCCGCGGGGTGTCCGGAGACTCCTTTGCCACTCGCGACTCGTCCCACATGTTACTCGTCTTCGTCTTCTTCTCTCGAAATTAACGAGAATGAGAGCCAAAACCAGAACCCTATCGGTCCAATTTCCGAGGAAGAGGAGAAATTAGTTCTCAAGCTGAGGAGCGACGACGCTTCTGAGCAGGAAGAAGCGGTTGTTTCGCTCAGAAACATCACCAAGACGAGAGAGGACACCAGAATTTCTCTTTGCACGCCTTCGTTACTCTCATCACTCCGACCATTGATCCCGTCGAAGCATTCCGTCGTGCAAGTAAACGCCGTCGCTTCGCTAGTTAATTTCTCCCTCGATAAATCTAACAAAGTGAAAATCGTTAGGTCTGGATTTATCCCTTCCCTCATTGAAGTCTTGAAAAGTGGATACCCCGAGGCGCAGGAACACGCAGCGGGAGCACTATTCAGCCTGGCCTTAGACGACGAGAACAAAATGGCGATCGGCGTTTTGGGCGCGTTGGAGCCACTCATGAACGCGTTGGATTCCGAGTCGGAAAGGACTCGGCACGACTCGGCGCTCGCGTTGTACCACCTGACCTTGGTCCAGAGCAACAGGGTGAAGCTGGTGAAGCTCGGGGTGGTACCAACGTTGCTATCAATGGTGAAATCGGGGGATTTGGCAAGCCGTGTCTTGCTGATTCTGTGTAATATTGCGGCGGGAATGGAGGGTCGAACGGCGATGCTGGACGCGAATGCGGTGGAGTGCTTGGTGGGTGTGCTGAGGGAGATTAAGGGGGCGGAGGCGAAAGCGACGAGGGAACACTGTGTGGCGGCGCTGTATGGAATGAGCCATGGGAGCTTGAGGTTCAAGGCGTTGGCAAAGGAAGCAAGGGCCGTGGAGGTGTTGAGAGAGGTTGAGGAGAGAGGATCAGAGAGGGCGAGAGAGAAGGCCAGGAGGATGTTGCAGATGATGAGAGCTGGAGGAGAAGAGGATGACGAGAATGGCGTCGGTTCGGATGGGGCATTGGACTCGGGTGTGTTGGGTCGAACCCGGTTCCGGGTTGGAGGTGGGAGGAATGCGGACGCGGCTAACACCACCACGTTTTAG 1608 0.546 MGGNGRPRWKISFHRNPSSSKLQSQEPPVEFLCPISGSLIAEPVVVASGQTFESISVQVCRDLCFSPKLEDGSTPDFSAAIPNLALKSTISNWCVKSRVENPRPPEYSAVERIVRTAMASPRENQASGLRASDRELLMAVPDNPPVIFSHAATELGPRVNPFKTSSSESAIAAGCPETPLPLATRPTCYSSSSSSLEINENESQNQNPIGPISEEEEKLVLKLRSDDASEQEEAVVSLRNITKTREDTRISLCTPSLLSSLRPLIPSKHSVVQVNAVASLVNFSLDKSNKVKIVRSGFIPSLIEVLKSGYPEAQEHAAGALFSLALDDENKMAIGVLGALEPLMNALDSESERTRHDSALALYHLTLVQSNRVKLVKLGVVPTLLSMVKSGDLASRVLLILCNIAAGMEGRTAMLDANAVECLVGVLREIKGAEAKATREHCVAALYGMSHGSLRFKALAKEARAVEVLREVEERGSERAREKARRMLQMMRAGGEEDDENGVGSDGALDSGVLGRTRFRVGGGRNADAANTTTF 535
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele17g1013 535 MobiDBLite consensus disorder prediction 191 211 - -
Lele17g1013 535 PANTHER U BOX DOMAIN-CONTAINING 24 492 - -
Lele17g1013 535 FunFam RING-type E3 ubiquitin transferase 214 491 - -
Lele17g1013 535 MobiDBLite consensus disorder prediction 1 25 - -
Lele17g1013 535 ProSiteProfiles U-box domain profile. 26 100 IPR003613 GO:0004842|GO:0016567
Lele17g1013 535 SMART Ubox_2 30 93 IPR003613 GO:0004842|GO:0016567
Lele17g1013 535 Gene3D - 213 490 IPR011989 -
Lele17g1013 535 SUPERFAMILY ARM repeat 217 491 IPR016024 -
Lele17g1013 535 MobiDBLite consensus disorder prediction 191 212 - -
Lele17g1013 535 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 297 334 IPR000225 GO:0005515
Lele17g1013 535 CDD RING-Ubox 32 63 - -
Lele17g1013 535 Pfam Armadillo/beta-catenin-like repeat 288 325 IPR000225 GO:0005515
Lele17g1013 535 Pfam Armadillo/beta-catenin-like repeat 327 366 IPR000225 GO:0005515
Lele17g1013 535 SUPERFAMILY RING/U-box 18 102 - -
Lele17g1013 535 Pfam U-box domain 28 96 IPR003613 GO:0004842|GO:0016567
Lele17g1013 535 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 19 96 IPR013083 -
Lele17g1013 535 SMART arm_5 407 451 IPR000225 GO:0005515
Lele17g1013 535 SMART arm_5 327 367 IPR000225 GO:0005515
Lele17g1013 535 SMART arm_5 286 326 IPR000225 GO:0005515
Lele17g1013 535 SMART arm_5 368 406 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele17g1013 Lele-ChrLele17 20853041 20854648 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele17g1013 1 535 U-box Gene Family AT5G65200 54.643 0.0 542
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele17g1013 17 20853041 20854648 Lele19g0544 19 3154828 3156435 hybridization
Lele17g1013 17 20853041 20854648 Lele20g0906 20 15422450 15423064 hybridization