Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele17g1004 ATGCTTATAAAGGCCACAATGATCAGTGCAATGTCTGGTAGATGCAGGGGTGAAAACCCCAGCATATTTGGTGCCATACTTAATATCTTAACAACTGTCACATTGAAACCTCCATCAACCATTGGTAGACATATTCAAACTTTGTCATATAACCTCCTAAACTATTCGCAGTTTACTAGTACTCTGTTTTTGCCTGTTAGAGTCATCTCTGATGTTTCAATCTTGCCACTTCAGAGTTCATCAATGTCTACCCCTAGTCATGCAATTGCAACGGCTGTGGCTGTTACTGCAACTGTTATGTTGTTAGTTTCTGGGATTTTGTTTTACTTGTTCTATAAGTTTATTCTATGTCGGCACAACCAAAGGCACAAGGTTGCTGCTGCTATTCTGCGTGATAAAGGGGTGAAACATCAGGACATTGAGAAAGTTAGTGGCAAAGTGAAAGGATTTGTCGTTGAAGAAGATGGAATCCACATTCTTTACATGTTGGAACCAGATGGTAGACCAGTGAGAAGTAGATTCCCAAAATGTTGGTTTAATCCAAGTTATGAAAATTCTGAAGAATTCATGAAAATTAATGTCAAACCAGTATCTTCCCCAGTACCTACTCTACCTTCTTCAGTTTCTGCATCATCACCTCTAAAGGCTCCTCCTCCTCCACCGCCACCTCCACCACCTCCTCCAAGAAAGGACATCACAAAGGTGCCACCTAAGCCTCCATCGCTACCACCTCCACCTCCAAAGGCATCATTGAGACCCCCACCTGCACCTAAAGGGAAAGCAAACATGCAGAACAAGAGTTCGAGTGAGAAAGATGGTGAAACAAAAAAGTTGAAGCCTCTTCACTGGGATAAGGTTGCAGCCAATGTTGATCATTCAACAGTGTGGGATCAGATCAATGATGGCTCTTTCTTGTTTGATGATCAACTCATCGTGAAACTATTTGGATATTCAAGCAACAAAAAAACCCAAGAAAGATACACGAGTCTTTCAACTACCTCCAGCTCCATTTCACCACCTCAAATATTCATTCTGGAGCCTAGAAAATCCCAGAACACTGCGATTGTGCTCAAGTCTATAGCAATTTCTCGTGATGAAATCCTAGAAGCACTCCTCGATGGCCAAGGACTCGGTTCTGACACACTTGAAAGACTCACAAGATTAGCTCCAACTCAAGAAGAAGCAGCCAAAATCATCAATTTCAATGGCGACACAGATAAACTAGCAGATGCAGAGTCTTCCCTTTACCACATCCTCAAAGCAGTACCGACAGCATTCCCTCGTTTGAAAGCAATGCTTTTCAGATCAAACTATGATTCTGAAGCACTTCAACTTAAAGAAAATCTGGGAACACTCGAAATGGGATGTAAGGAGCTGAGGACTAGTGGTCTCTTTAGAAAACTCCTAGAAGCCATTCTCAAAGCTGGGAACCGAATGAATGCTGGAACTTCAAGGGGCAATGCACAAGGTTTCAACTTAAACTCTCTTAGCAAGCTTTCTGACGTGAAAAGTACAGATGGTAAGACCTGTTTGCTTCACTTCATCGTGGAACAAGTGGTTCAGTCAGAAGGAAGAAGAGAAGCTAAGCATCAGAAGCAGAAGAACCTGCCAGACAGAGAATATCTGATTCTTGGCTTACCAGTTCTAAGAGGTCTGAGTGATGAGTTATCTGAAGTAAGAAAAGCAGCAAACATAGAACATCACAGTTTCATCAGTTTGTGTTCAACTTTGCATGCTCACGTCACTGAAATTCGCCAGATTATGACATGTTGTAATAACGGTGATGAGAGAGATGGGTTTATTAAGGAAATGAAAGGGTTCTTAGAGGACTGTGAAGAGGAACTGAAGGTGGTGAAAGAAGAAGAGGAAAGGATCATGGAGCTTGTGAAGAAGACGAACGAGTATTATCTAGCCGGAGGAGGATCCAAAGACAGCATGATGTCAAACCCATTTCAGTTGTTCGTTATTGTAGAACAGTTTGTTGACATGGTAGATCTGGCTTGCTTAGAACTCAAGAAGAAGATAGAAAAGAAGAACGTAGGAGGAGGAGTAGAAGCTGTATCATTATCAACATCATCATCACCATCAAAGAAGATTGTGCCCCTCAGATTTCCAAACTTCGATTTCCATTTTGTGTCGAATATGTCAGAAGCAACAACATCTTCAAGCCAATCAGAAGATGATTTTTGA 2190 0.4164 MLIKATMISAMSGRCRGENPSIFGAILNILTTVTLKPPSTIGRHIQTLSYNLLNYSQFTSTLFLPVRVISDVSILPLQSSSMSTPSHAIATAVAVTATVMLLVSGILFYLFYKFILCRHNQRHKVAAAILRDKGVKHQDIEKVSGKVKGFVVEEDGIHILYMLEPDGRPVRSRFPKCWFNPSYENSEEFMKINVKPVSSPVPTLPSSVSASSPLKAPPPPPPPPPPPPRKDITKVPPKPPSLPPPPPKASLRPPPAPKGKANMQNKSSSEKDGETKKLKPLHWDKVAANVDHSTVWDQINDGSFLFDDQLIVKLFGYSSNKKTQERYTSLSTTSSSISPPQIFILEPRKSQNTAIVLKSIAISRDEILEALLDGQGLGSDTLERLTRLAPTQEEAAKIINFNGDTDKLADAESSLYHILKAVPTAFPRLKAMLFRSNYDSEALQLKENLGTLEMGCKELRTSGLFRKLLEAILKAGNRMNAGTSRGNAQGFNLNSLSKLSDVKSTDGKTCLLHFIVEQVVQSEGRREAKHQKQKNLPDREYLILGLPVLRGLSDELSEVRKAANIEHHSFISLCSTLHAHVTEIRQIMTCCNNGDERDGFIKEMKGFLEDCEEELKVVKEEEERIMELVKKTNEYYLAGGGSKDSMMSNPFQLFVIVEQFVDMVDLACLELKKKIEKKNVGGGVEAVSLSTSSSPSKKIVPLRFPNFDFHFVSNMSEATTSSSQSEDDF 729
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele17g1004 729 PANTHER FORMIN-RELATED 80 695 IPR027643 GO:0003779|GO:0030036|GO:0045010|GO:0051015
Lele17g1004 729 MobiDBLite consensus disorder prediction 265 280 - -
Lele17g1004 729 Coils Coil 601 631 - -
Lele17g1004 729 MobiDBLite consensus disorder prediction 200 280 - -
Lele17g1004 729 SMART it6_source 268 679 IPR015425 -
Lele17g1004 729 Pfam Formin Homology 2 Domain 270 664 IPR015425 -
Lele17g1004 729 ProSiteProfiles Formin homology-2 (FH2) domain profile. 268 690 IPR015425 -
Lele17g1004 729 SUPERFAMILY Formin homology 2 domain (FH2 domain) 218 678 - -
Lele17g1004 729 MobiDBLite consensus disorder prediction 212 254 - -
Lele17g1004 729 Gene3D Formin, FH2 domain 276 680 IPR042201 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele17g1004 Lele-ChrLele17 20811792 20815073 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele17g1004 89 726 FH2 protein (formin) Gene Family AT1G70140 39.100 9.76e-146 442
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele17g1004 17 20811792 20815073 Lele21g1843 21 25937817 25943704 CCT
Lele17g1004 17 20811792 20815073 Lele22g1817 22 23249165 23252335 CCT
Lele17g1004 17 20811792 20815073 Lele23g0169 23 1069444 1072858 CCT
Lele17g1004 17 20811792 20815073 Lele24g1772 24 22896136 22901242 CCT
Lele17g1004 17 20811792 20815073 Lele19g0555 19 3199480 3201549 hybridization