Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele17g0978 ATGACTGTTAGGTATTGCAAGCCCCCATCCTCTGCCGGAAGACGACGCAGCTTGAAGCGCAAGCGCCAACAGAAAGGAGCAGATTATCCAACGGCCGATTGTAAAGCGTTGGTTCTCAAACCTCAAAAGTCTCATCAATCCCTTTTGAGTAAAGTTGTGTCGCAAGTCACTATCCTCAACTCCAGTTTATCATTGTCTCAGTCGGATCGCCTCGCCGCCAAGCGCGCTGCTCATGTTCTACGTGAACTCGCAAAGCTAATTGTTAATAATATAGTGGAATCCGGAGCCGTTCCTGCTCTTTTAAAACATCTGAAAGCACTAGAACCAGGTGTTCTCAAGCCTTACGAGCATGAGGTGAAAAAGGATTGTGTCCGGGTCCTTGTCGTTCTTGCTTCGAAACCAGAGCATCGACAACCCATTGTGGATGCCGGAGCTTTGCCCTATCCTGTGGATTTGTTAAAGAGGCAGAAGACCTGTGACTGTGGCTATTCGCCGGCATTTACTGGCCTTCTGATGATAGCAGCTGATGCCATCAGAAACCTTACGATGGACAATAACAGCATTAAAACCCAGGTTGACTGTCCGTTCAAGAAGGAAGGTGGTATCCCTCCTCTTGTTGAATTGCTTGAATTTGATGATGCAACGGTACAACTTGCAGCTGTACTGGCCTTACGTAGTCTCACATTCAGGAATAAAGAGAATCAAAACCAGGTAGATGACCTTGCATGGCTACTTGCTGCGGTGATTGGAAATCTGGTCTATTCTTCTCCAAACATGATGAGAAAAGTTCTTCTAGTTGGTGCTCTTCAACCTGTAATTGAATTACTTAGATCTGGCTATTTGGAGAGTCAAAGAGAAGCAGCTCATTTAATTGGTCTATTTGCTGCGACAGATTCTGATTGCAAGGTTCACATTGCTCCAAGAGGGGCTATCCAGCCACTGATTCACATGCTTGAGTCTCCACATGCACAGGTTCGTGAAATGTCAGCTTATGCACTTCGGATACTCGCTGAGGACACACACAATCAAGTTGGTATTGCTTATAATGGAGGTATAGAGCCTCTACTCAATAGCCTTTTATGCTCCAAGGATGGAACTCTCCTAGAGAAAGAGAATGTGGCCTTTGCTCTTAATTGTCTTGCTGATAATGAGGACATTGTTGTGGATATTGTTAAGGTTGGTGGTGTTCGAAAACTACAGGATGGAGATTTCATAGTTCAATCTAGCTATTTTTTCCCCCTCAATTTCTGTTCTCAACATCGGATAGGACCCATCAGTTTCCTTTCTCTAGCAGGTGCTGAAACAACTGTTGTATCTTATGCGTTTTGGAGAAAAGGACTTGAGTGCCTGCTCGATCTTCTAAAATCTAGAGACCTCGAACAGAAACGCGAGGCTTCAATGGCACTTCACTCGTTGGCTGTCGAACCACATCTTTCTCTCCCTTTGATGATACTCCTCCATCCCCGACTCCCCAGGTGA 1479 0.453 MTVRYCKPPSSAGRRRSLKRKRQQKGADYPTADCKALVLKPQKSHQSLLSKVVSQVTILNSSLSLSQSDRLAAKRAAHVLRELAKLIVNNIVESGAVPALLKHLKALEPGVLKPYEHEVKKDCVRVLVVLASKPEHRQPIVDAGALPYPVDLLKRQKTCDCGYSPAFTGLLMIAADAIRNLTMDNNSIKTQVDCPFKKEGGIPPLVELLEFDDATVQLAAVLALRSLTFRNKENQNQVDDLAWLLAAVIGNLVYSSPNMMRKVLLVGALQPVIELLRSGYLESQREAAHLIGLFAATDSDCKVHIAPRGAIQPLIHMLESPHAQVREMSAYALRILAEDTHNQVGIAYNGGIEPLLNSLLCSKDGTLLEKENVAFALNCLADNEDIVVDIVKVGGVRKLQDGDFIVQSSYFFPLNFCSQHRIGPISFLSLAGAETTVVSYAFWRKGLECLLDLLKSRDLEQKREASMALHSLAVEPHLSLPLMILLHPRLPR 492
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele17g0978 492 MobiDBLite consensus disorder prediction 1 29 - -
Lele17g0978 492 Pfam Armadillo/beta-catenin-like repeat 198 228 IPR000225 GO:0005515
Lele17g0978 492 SMART arm_5 133 183 IPR000225 GO:0005515
Lele17g0978 492 SMART arm_5 189 229 IPR000225 GO:0005515
Lele17g0978 492 SMART arm_5 84 132 IPR000225 GO:0005515
Lele17g0978 492 SMART arm_5 256 296 IPR000225 GO:0005515
Lele17g0978 492 SMART arm_5 434 474 IPR000225 GO:0005515
Lele17g0978 492 SMART arm_5 298 338 IPR000225 GO:0005515
Lele17g0978 492 Gene3D - 164 241 IPR011989 -
Lele17g0978 492 SUPERFAMILY ARM repeat 67 400 IPR016024 -
Lele17g0978 492 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 200 235 IPR000225 GO:0005515
Lele17g0978 492 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 309 351 IPR000225 GO:0005515
Lele17g0978 492 PANTHER ARM REPEAT PROTEIN INTERACTING WITH ABF2 10 409 IPR044282 -
Lele17g0978 492 Gene3D - 242 479 IPR011989 -
Lele17g0978 492 Gene3D - 45 158 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele17g0978 Lele-ChrLele17 20670424 20674625 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele17g0978 199 401 U-box Gene Family AT2G23140 31.034 2.80e-10 60.8