LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele17g0977	ATGGAGGACAAGTCCCAAGTATTGGAGGCTGTGTTGAAGGAAGCTGTGGATTTGGAGAACGTGCCCATTGAGGAGGTTTTTGAGAATCTAAGATGTAGCAGAGAAGGTCTGACCTCTGTGTCCGCTGAGGAGAGACTCACCATTTTCGGGCATAACAAGCTTGAAGAGAAAAAGGAGAGCAAATTTTTGAAGTTCTTGGGCTTTATGTGGAATCCTCTGTCTTGGGTTATGGAGGCTGCTGCCATAATGGCAATTGCGCTTGCAAATGGAGGGGGGAAGCCTCCTGACTGGCAAGACTTTGTGGGTGAGTCCCTGCCAGTGACAAAAGGTCCCTGTGATGGCGTGTACTCTGGTTCTACCTGCAAGCAAGGAGAGATTGAGGCTGTGGTCATTGCCACTGGTGTCCATACCTTCTTTGGGAAAGCTGCTCACCTTGTAGATACCACTAATCAAGTTGGTCACTTCCAAAAGGTCTTGACTGCGATTGGGAACTTCTGCATATGTTCAATTGCTGCGGGGATTCTTATTGAGATTATTGTCATGTATCCTATCCAAGACCGACAGTATCGTCCTGGAATCGATAACCTTCTTGTACTTCTCATTGGAGGAATTCCAATTGCCATGCCCACAGTTCTTTCAGTGACCATGGCTATTGGTTCTCACAGGTTATCTCAGCAGGGAGCTATCACTAAGAGGATGACAGCCATTGAAGAGATGGCAAGCATGGATGTGCTTTGCAGTGATAAAACTGGGACTCTAACATTAAACAAGCTATCTGTTGACAAAAATCTTTTTGAGGTTTTTGCAAAAGGAGTGGATCCGGATACTATTGTTTTGATGGCAGCTCGAGCCTCGAGATTTCAGAATCAAGATGCAATAGATTCTGCCATAGTTGGGATGCTGGCTGATCCTAAAGAGGCACGAGTGGGAATACAAGAAGTACATTTTCTTCCTTTCAATCCTACTGATAAGAGGACAGCGTTAACTTACATTGATGGTGAAGGTAAAATGCATAGGGTGAGCAAAGGTGCGCCAGAGCAGATTCTCAATCTTGCACACAATAAGTCAGATATAGGACGCAGAGTCCATGCAATAATAGATAAGTTTTCAGAGCGCGGTCTACGATCTCTTGCTGTAGCATACCAGAAAGTTCCAGAAGGAAGGGAGGAGAGTGCTGGAGGCCCATGGCGGTTCATTTGTCTTATGACTATCTTTGACCCACCCAGGCATGACAGTGCAGAAACAATACGGAAGGCTCTAAACCTTGGAGTAAATGTCAAAATGATAACATGTGATCAACTTGCTATAGGGAAGGAAACCGGCCGTCGTTTGGGAATGGGGACCAACATGTATCCCTCATCTGCATTGCTTGGGCATGATAAGGATGAGTCCATTTCTGCACTACCCATTGATGAATTGATAGTAAAAGCTGATGGATTTGCTGGTGTTTTTCCTGAACACAAGTATGAGATTGTGAAACGCTTGCAAGCGAGGAAACATATATGTGGAATGACTGGTGATGGAGTAAATGATGCCCCTGCTCTTAAAAAGGCTGACATTTGTATAGCTGTTACCGATGCAACTGATGCCGCTCGCAGCGCATCTGATATTGTTTTAACAGAACCTGGCCTTAGTGTTATTATTAGTGCTGTTTTGACAAGCCGGGCCATCTTCCAGAGAATGAAAAATTATACAATTTATGCTGTCTCAATTACAATCCGTATTGTGCTTGGTTTCATTTTGTTGGCTCTCATATGGAAGTTTGACTTTCCTCCTTTTATGATGCTAATCATCGCCATCCTAAATGATGGTACTATCATGACAATCTCAAAAGATAGAAAAACAGATTTCTTCCTGCGAGTATTTGGGGTCTCAACTCTTGAAAAAACTGCTCATGATGATTTCCGGAAACTTGCCTCGGCGATATATCTTCAAGTGAGCACTATCAGTCAGGCACTTGTATTCGTGACTCGGTCTCGAGGCTGGTCATATGTTGAGCGTCCTGGTATGCTTTTAAGGACTGCTTTTGTGGTTGCTCAGCTGATTGCCACCTTGATTGCTGTATATGCAAACTGGAGTTTTGCAGGAATCGGTTGGGGTTGGGCTGGAGTAATATGGTTATACAACATCATATTTTACATCCCACTTGATTTCATCAAGTTCTTCATTCGTTATGCTTCGAGTGGCAGGGCTTGGGATCTTGTTATTGAGCAAAGGATTGCATTTACAAGGCAAAAGGACTTTGGGAAGGAACAAAGGGAACTTCAATGGGCACATGCTTAG	2283	0.4402	MEDKSQVLEAVLKEAVDLENVPIEEVFENLRCSREGLTSVSAEERLTIFGHNKLEEKKESKFLKFLGFMWNPLSWVMEAAAIMAIALANGGGKPPDWQDFVGESLPVTKGPCDGVYSGSTCKQGEIEAVVIATGVHTFFGKAAHLVDTTNQVGHFQKVLTAIGNFCICSIAAGILIEIIVMYPIQDRQYRPGIDNLLVLLIGGIPIAMPTVLSVTMAIGSHRLSQQGAITKRMTAIEEMASMDVLCSDKTGTLTLNKLSVDKNLFEVFAKGVDPDTIVLMAARASRFQNQDAIDSAIVGMLADPKEARVGIQEVHFLPFNPTDKRTALTYIDGEGKMHRVSKGAPEQILNLAHNKSDIGRRVHAIIDKFSERGLRSLAVAYQKVPEGREESAGGPWRFICLMTIFDPPRHDSAETIRKALNLGVNVKMITCDQLAIGKETGRRLGMGTNMYPSSALLGHDKDESISALPIDELIVKADGFAGVFPEHKYEIVKRLQARKHICGMTGDGVNDAPALKKADICIAVTDATDAARSASDIVLTEPGLSVIISAVLTSRAIFQRMKNYTIYAVSITIRIVLGFILLALIWKFDFPPFMMLIIAILNDGTIMTISKDRKTDFFLRVFGVSTLEKTAHDDFRKLASAIYLQVSTISQALVFVTRSRGWSYVERPGMLLRTAFVVAQLIATLIAVYANWSFAGIGWGWAGVIWLYNIIFYIPLDFIKFFIRYASSGRAWDLVIEQRIAFTRQKDFGKEQRELQWAHA	760

Annotation information

Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Lele17g0977	760	Gene3D	-	401	542	IPR023214	-
Lele17g0977	760	ProSitePatterns	E1-E2 ATPases phosphorylation site.	248	254	IPR018303	-
Lele17g0977	760	SFLD	Haloacid Dehalogenase	228	557	-	-
Lele17g0977	760	Pfam	E1-E2 ATPase	102	225	-	-
Lele17g0977	760	SUPERFAMILY	Calcium ATPase, transmembrane domain M	17	726	IPR023298	-
Lele17g0977	760	TIGRFAM	ATPase_P-type: HAD ATPase, P-type, family IC	479	593	IPR001757	GO:0005215\|GO:0005524\|GO:0016020\|GO:0016887
Lele17g0977	760	TIGRFAM	ATPase_P-type: HAD ATPase, P-type, family IC	113	279	IPR001757	GO:0005215\|GO:0005524\|GO:0016020\|GO:0016887
Lele17g0977	760	Pfam	Cation transporter/ATPase, N-terminus	20	83	IPR004014	-
Lele17g0977	760	SFLD	p-type atpase	228	557	IPR044492	-
Lele17g0977	760	PANTHER	CALCIUM-TRANSPORTING ATPASE	102	760	-	-
Lele17g0977	760	PRINTS	P-type cation-transporting ATPase superfamily signature	400	411	-	-
Lele17g0977	760	PRINTS	P-type cation-transporting ATPase superfamily signature	505	524	-	-
Lele17g0977	760	PRINTS	P-type cation-transporting ATPase superfamily signature	96	110	-	-
Lele17g0977	760	PRINTS	P-type cation-transporting ATPase superfamily signature	246	260	-	-
Lele17g0977	760	PRINTS	P-type cation-transporting ATPase superfamily signature	422	432	-	-
Lele17g0977	760	PRINTS	P-type cation-transporting ATPase superfamily signature	528	540	-	-
Lele17g0977	760	Gene3D	-	68	250	-	-
Lele17g0977	760	Gene3D	-	613	726	-	-
Lele17g0977	760	SUPERFAMILY	Calcium ATPase, transduction domain A	102	146	IPR008250	-
Lele17g0977	760	FunFam	Plasma membrane ATPase	258	405	-	-
Lele17g0977	760	Gene3D	-	258	400	IPR023299	GO:0000166
Lele17g0977	760	TIGRFAM	ATPase-IIIA_H: plasma-membrane proton-efflux P-type ATPase	101	613	IPR006534	GO:0008553\|GO:0016020\|GO:0120029
Lele17g0977	760	PRINTS	H+-transporting ATPase (proton pump) signature	477	493	IPR001757	GO:0005215\|GO:0005524\|GO:0016020\|GO:0016887
Lele17g0977	760	PRINTS	H+-transporting ATPase (proton pump) signature	362	380	IPR001757	GO:0005215\|GO:0005524\|GO:0016020\|GO:0016887
Lele17g0977	760	PRINTS	H+-transporting ATPase (proton pump) signature	505	521	IPR001757	GO:0005215\|GO:0005524\|GO:0016020\|GO:0016887
Lele17g0977	760	PRINTS	H+-transporting ATPase (proton pump) signature	536	561	IPR001757	GO:0005215\|GO:0005524\|GO:0016020\|GO:0016887
Lele17g0977	760	Pfam	haloacid dehalogenase-like hydrolase	242	519	-	-
Lele17g0977	760	SUPERFAMILY	HAD-like	242	552	IPR036412	-
Lele17g0977	760	SMART	Cation_ATPase_N_a_2	17	89	IPR004014	-
Lele17g0977	760	FunFam	Plasma membrane ATPase	398	553	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele17g0977	Lele-ChrLele17	20658026	20664471	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lele17g0977	96	760	Primary Pumps ATPases	AT5G62670	84.278	0.0	1215