Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele17g0960 ATGTCTGTACACTGGCCTCTCGTTTGTCGCGTCCGAGACGATCGAAACCGCTCTCTCTACCCCATTTTTGCGTCTTTATCTGAAATTTCAAATGTCTCTAACAAATATTATACTCGCAAAACCATATTTTGCTCATCTCTGCCTTCTCGTCCTTCTCTTGGAACATTGGGGGAGAAGAGAAGGACAGAGTGCAGGGAATGCCAGCCGAAAATATATAAATTTCTTAGACTGACTACTGAAAAAAAATGCTATCGTGTGGATGAATGTATGTTACTTGAGTCTCGCATGGAAAATGCTTCAAAAGTTCCTGGTAGAAGCAACCATTCCTGTTTAAATAAATTAGTGCTTGAATACAACAACAAAGATAAATCTCTGACTTCCTGCTCCCCAAGATCCGAATGCGATATACTTTCCTCACCAAATTTGAAGGCCTTCACATTTAATGAACTTAAAAGTTGCACTAGAAACTTTGGTCCTGATAACCTACTAGGACAAGGGGGCTTTGGTGATGTGCACAAGGGGTGGATTGATGAGCAATCCCTTAGTGCTACTAAGCCTGGATCTGGAATGGTTGTGGCCGTGAAGAAGTTGAAACCTGAAGGTTTTCAAGGGCATAAGGAGTGGCTTGTAGGTTACTTTTCTCAACACTTAATCCAGCTGATTTTCCTTGAAATAATGAATGCTTATCATAAATTTCTTGGTTTACAGTGTGAAGTCAATTATCTTGGTCAACTTCATCATCCAAATCTTGTCAAACTTATTGGATACTGCCTCGATGGAGACAACCGGCTTCTAGTATACGAGTACATGCCCAAAGGCAGCTTGGAGAACCATCTATTTCGCAGGGGCTCACAGTCACTTTCATGGGCAACAAGGATCAAAGTTGCCATTGATGCTGCTCGTGGCCTTGCCTTTCTACACGACTCCAATCCACAAGTTATCTACCGTGATTTTAAGGCTTCGAATGAATTTAAGGCAAAACTCTCAGACTTTGGGTTGGCTAAAGCAGGACCAACTGGTGATCGTTCTCACGTTTCAACTCAAGTCATGGGTACTCACGGCTATGCTGCTCCTGAATATATTGCTACAGGGAGCTCACCTTTGGGAAATGTTCTGCGTTTAACAGAGAGCAAGTCTGTATCTAGTCACCCAAGTGACAGCACTATGAAATCTCCCTTGCCATCATCTTTGAGATCCCAAGGGGGTGATAAAAGAGGAGTGTTTAAAGGATTCGAGGTTGGAAAGGGAAGAGTCGTAGAGGTCCCAGATGGTCTCATTCGAAGGCCCTCCATAGCAAGCAAACTTGTTGCGTCTTTGGCCTTGAGCCCCCTTCCCGGCACTACTTCTATAGCTCGTGTAATCGCTGATCGTAATCAAGGTCTTGATACTTACACTTGGAACACGATCGCCAGAGGGGAACAGTTGCACGCTCAAGTGTGCAAACTGGGACTCTCGCTTGAGCTTATAATCGGAACTGCAATTCTGCAAATGTATGCGTCCAAGTGTTGTTTCTTCTTGCTCTTCGATGAAAGCATTGAAAGAGGGCAGAGTAGTCCATATGGTTATGTGATCAGAAATCTCTTCCATTTTGATATTTTTCTCAACAATGCCTTGATTGGAATGTATTCAAATTGTGAGGACCTTTCAAAGGCCCTCCTCATCTTTCTATTGATGCCTTCAAGAAATGTGGTTTCATGGACATCAATGATCAAGGCTTATGTTGATAACAACCGTCCACATGATGCATTGAATCTGTTCACCAAGATGGAATCTATATAG 1779 0.4289 MSVHWPLVCRVRDDRNRSLYPIFASLSEISNVSNKYYTRKTIFCSSLPSRPSLGTLGEKRRTECRECQPKIYKFLRLTTEKKCYRVDECMLLESRMENASKVPGRSNHSCLNKLVLEYNNKDKSLTSCSPRSECDILSSPNLKAFTFNELKSCTRNFGPDNLLGQGGFGDVHKGWIDEQSLSATKPGSGMVVAVKKLKPEGFQGHKEWLVGYFSQHLIQLIFLEIMNAYHKFLGLQCEVNYLGQLHHPNLVKLIGYCLDGDNRLLVYEYMPKGSLENHLFRRGSQSLSWATRIKVAIDAARGLAFLHDSNPQVIYRDFKASNEFKAKLSDFGLAKAGPTGDRSHVSTQVMGTHGYAAPEYIATGSSPLGNVLRLTESKSVSSHPSDSTMKSPLPSSLRSQGGDKRGVFKGFEVGKGRVVEVPDGLIRRPSIASKLVASLALSPLPGTTSIARVIADRNQGLDTYTWNTIARGEQLHAQVCKLGLSLELIIGTAILQMYASKCCFFLLFDESIERGQSSPYGYVIRNLFHFDIFLNNALIGMYSNCEDLSKALLIFLLMPSRNVVSWTSMIKAYVDNNRPHDALNLFTKMESI 592
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele17g0960 592 ProSiteProfiles Protein kinase domain profile. 157 461 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele17g0960 592 ProSitePatterns Protein kinases ATP-binding region signature. 163 196 IPR017441 GO:0005524
Lele17g0960 592 SUPERFAMILY Protein kinase-like (PK-like) 136 364 IPR011009 -
Lele17g0960 592 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 562 592 IPR002885 -
Lele17g0960 592 TIGRFAM PPR: pentatricopeptide repeat domain 564 590 IPR002885 -
Lele17g0960 592 Gene3D Transferase(Phosphotransferase) domain 1 270 380 - -
Lele17g0960 592 Gene3D Tetratricopeptide repeat domain 507 592 IPR011990 GO:0005515
Lele17g0960 592 Gene3D Phosphorylase Kinase; domain 1 132 269 - -
Lele17g0960 592 MobiDBLite consensus disorder prediction 376 403 - -
Lele17g0960 592 MobiDBLite consensus disorder prediction 376 398 - -
Lele17g0960 592 Pfam PPR repeat 536 563 IPR002885 -
Lele17g0960 592 Pfam PPR repeat 564 591 IPR002885 -
Lele17g0960 592 PANTHER OS01G0588500 PROTEIN-RELATED 121 365 - -
Lele17g0960 592 Pfam Protein kinase domain 236 364 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele17g0960 Lele-ChrLele17 20566657 20572530 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele17g0960 143 364 Glycoside Hydrolase AT3G07070 49.130 1.75e-60 205
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Lele17g0960 Pkinase 2.8e-22 CL0016