Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele17g0956 ATGTCTGGTCAAAAAAGTTGCGGAGCTTCAAACTTCAACGAGAATGAGATTAATGATCTTGTGTCCAAGTTACAAGCACTTCTGCCTCAACTGAACCGAAGGACTGACTCAAGGGTATCAGTGTCGAATATCTTGAAAGAAACTTGCAGTCACATCGAGAAGCTAGAGAAGGAAGTGGAAGAGCTTAGTGAAAGGGTAACAGGGCTGATGGATTCTGCTGACATTAGGGATATAGACGAAGAGAGTCTTAGAAGATTATTGCTACGTGCTGCAAGAAAAGGAGAAGTTTTTGACATACATAATTCCCAGGAGGCAACCCACAACAATCCTTGGGATAACATAAAGTACAAACAGCAGAATGAAATCTGCATATAG 375 0.4133 MSGQKSCGASNFNENEINDLVSKLQALLPQLNRRTDSRVSVSNILKETCSHIEKLEKEVEELSERVTGLMDSADIRDIDEESLRRLLLRAARKGEVFDIHNSQEATHNNPWDNIKYKQQNEICI 124
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele17g0956 124 Pfam Helix-loop-helix DNA-binding domain 16 56 IPR011598 GO:0046983
Lele17g0956 124 Coils Coil 45 72 - -
Lele17g0956 124 Gene3D - 14 86 IPR036638 GO:0046983
Lele17g0956 124 PANTHER DNA BINDING PROTEIN 5 87 IPR044172 -
Lele17g0956 124 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 15 70 IPR036638 GO:0046983
Lele17g0956 124 Coils Coil 116 124 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele17g0956 Lele-ChrLele17 20544955 20547416 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele17g0956 1 74 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G47710 49.367 4.01e-17 69.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lele17g0956 HLH 0.00014 No_clan