Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele17g0929 ATGGCGGGAGAATCGCCTTCTTCTTCAGTTGTTCTTACCATGGACAGTCTTGAAGACGTCGAAAATTACGTTTGGGCACATGAACAAGAAGGTTTGGCATGGGACACGTACCGTCATATTTTTGAACTTGTGCATAATGGCAACATGTCATTTCGGGAGAATCGGTTGGAAGAGGCAGTCAACTTTTACTCAAGAGCAAATAGCATCAAACCTGGTGATCCTGTTATCCTCAGCAACCGATGTGCAGCTTATCTTAGGATTAGCAAATTATTAAAAGACAGATCACCATCGGCTTCAGAATGTAAACCATTGAGTGGGCTTGATCCTACAATACATGCTGAACTTGGTTTGAAGGATGCTGAGAAGCTTATTGACCTGCGAAGTAATTCAGTAAGATCATACCTCTTAAAGGCTAATGCGCTTTTTCTGTTAGAGAAATATGAAAAAGCCCGAGACGCTATTCTTTCAGGCCTTCAAGTTGATCCGTTTAGCGATTCCTTGCGAGCTTCACTTAAAAGTTTGGATGTAGTATCTGCTAGTTTGACGGGGACGAGTAGACATGGACAGCCAGGGATGAGTACACATGGACAACCAGAGCGCAGTGATGACTTTGATTGCACCGTTTGCCTGAAGTTGTTATACGAACCTGTTACAACCCCTTGTGGACATTCTTTTTGCCATTCATGTCTATTTCAGTCAATGGATCATGGCAACAGATGCCCATTGTGCAGGACAGTTCTTTTTATCAGTCCTCGAACATGTTCCATCAGTGTGACATTGAAGAACATCATACAGAAGAACTTTCCGGAACAATATGCCAAAAGGAAGCAAGAGCATGAAAGTTTGACCAACTTTGGCGTAGATTTGATTCCTCTTTTTGTCATGGATGTTGCCATGCCATGTCAAAAGTTCCCACTCAATATATTTGAACCTCGATATAGACTTATGGTCAGAAGAGTAATGGAAGGGAATCATAGGATGGGAATGGCTATAATTGATTCTACAACAGGTTCCTTAGCTGAGTATGCTTGCGAAGTGGAAATTACAGAGTGTGAGCCACTTCCGGATGGACGTTTCTATATAGAGATTGAAAGTCGCAGGAGATTTCGCATAATCCGATCTCGGGATCAAGATGGGTATCGTGTAGCAGAGGTTGAATGGATACAGGATATCATGCCACCAGAAGGTAGTTTAGAGAAACAGTATTTACTGGAATTGACATATGATGCAGCTGAAACTGCTCGTTCATGGATAAGAAGAGCTAAAGAAGCAGCAAGAGCAAAACAAGATCAAAGAAGACTTGAGAGAATCCAGTCTGTTGAACTGATGATGCCCAGTCTAAAAGATCCAGAGCTCTTCAGTTTTTGGCTTGCTTCCTTGTCAAAGTTGAGGCCTCTTGAAAGATTAGATCTTATGGGCTCAAGAGATACTAGAGAGAGGATTAAGCGGGGGCTGAACTATCTGCGAGCAGAGGAACAACGCTGCAGAATTCAATAA 1497 0.4242 MAGESPSSSVVLTMDSLEDVENYVWAHEQEGLAWDTYRHIFELVHNGNMSFRENRLEEAVNFYSRANSIKPGDPVILSNRCAAYLRISKLLKDRSPSASECKPLSGLDPTIHAELGLKDAEKLIDLRSNSVRSYLLKANALFLLEKYEKARDAILSGLQVDPFSDSLRASLKSLDVVSASLTGTSRHGQPGMSTHGQPERSDDFDCTVCLKLLYEPVTTPCGHSFCHSCLFQSMDHGNRCPLCRTVLFISPRTCSISVTLKNIIQKNFPEQYAKRKQEHESLTNFGVDLIPLFVMDVAMPCQKFPLNIFEPRYRLMVRRVMEGNHRMGMAIIDSTTGSLAEYACEVEITECEPLPDGRFYIEIESRRRFRIIRSRDQDGYRVAEVEWIQDIMPPEGSLEKQYLLELTYDAAETARSWIRRAKEAARAKQDQRRLERIQSVELMMPSLKDPELFSFWLASLSKLRPLERLDLMGSRDTRERIKRGLNYLRAEEQRCRIQ 498
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele17g0929 498 Pfam ATP-dependent protease La (LON) substrate-binding domain 290 488 IPR003111 -
Lele17g0929 498 ProSiteProfiles Lon N-terminal domain profile. 287 490 IPR003111 -
Lele17g0929 498 PANTHER RING FINGER PROTEIN 127 31 490 - -
Lele17g0929 498 SUPERFAMILY PUA domain-like 290 488 IPR015947 -
Lele17g0929 498 Gene3D - 288 390 IPR046336 -
Lele17g0929 498 ProSiteProfiles Zinc finger RING-type profile. 206 244 IPR001841 -
Lele17g0929 498 ProSitePatterns Zinc finger RING-type signature. 221 230 IPR017907 -
Lele17g0929 498 SUPERFAMILY TPR-like 41 167 IPR011990 GO:0005515
Lele17g0929 498 SUPERFAMILY RING/U-box 201 269 - -
Lele17g0929 498 SMART lon_5 289 490 IPR003111 -
Lele17g0929 498 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 193 286 IPR013083 -
Lele17g0929 498 Pfam Zinc finger, C3HC4 type (RING finger) 206 243 - -
Lele17g0929 498 Gene3D Tetratricopeptide repeat domain 39 176 IPR011990 GO:0005515
Lele17g0929 498 SMART ring_2 206 243 IPR001841 -
Lele17g0929 498 SMART tpr_5 40 73 IPR019734 GO:0005515
Lele17g0929 498 SMART tpr_5 131 164 IPR019734 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele17g0929 Lele-ChrLele17 20362291 20367452 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele17g0929 194 247 C3H Transcription Factor Family AT1G74990 36.842 7.77e-10 55.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele17g0929 17 20362291 20367452 Lele19g0633 19 3638784 3644120 hybridization
Lele17g0929 17 20362291 20367452 Lele20g0819 20 14909457 14914286 hybridization