Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele17g0919 ATGATGGAGGAAAATAGGCTCAAGCAAAGAAGAGTGTCATTATCTGATCCACCGTCACAGCCAATTGTTGAGGATGAGGCTGTAATTAGAGATGACAAGCATGGAATTGCAGTTGCAGCTGCAACATTAGCCATTTACTCACTAGAACAAGCAGAGTTGCTTAATTTGCAGAAGATGAGAGAAGGAGGAAGTTGGAAGAAAAAGTCATTTAGAGAGGATGATCATGAAGGACAGTTTCATGTCAGACTTTCAAGTGCTGGGAAATCTCCAAGCCCCCCAAACCCAATACGCATAGCCAGATATCAAAAGCATAAAGAGATTCACATTCCCTCGCAGCAAAATACTGTCAATTCCAGAGCAGAATGTTGGAAAATGGCCAAGATTCAAAAGCGATACGAGAAGATAAAGTTTAAGATTCTTGTATGGGAGGGTGAGAAGAAGATGCAGGCTATTCTTCAAAAGGATAGGACCAAGAACGAACTGGAGCAGAAAAGAGCAATGGCAATGCTGCATCACCAGAACAAGATAACAATGATAAATAGGATAGCACAAAGAGCAAGAGCAAAGTTGGAAGACAAAAGAAGAAAGGAAGAGTCTAAGGTTAAAGAAAAAGCAAACAAGATCATAAAAACAGGCAGTCCAGCCGCATGGTTAATAGTCTGCATCCATGTCCAAGTGATATTCCAGGCTGCAGAATCTGCAACAGATATTATGGTACTGGAAAATCAAGACCAAGAAGAAGACAGAGACACTAAGGAAGAAACAGGCCGTTCCAACTCAACAAGAAGAAATCGAGCAGCTGCTGTCCATAACCAGAGTGAGCAGAGACGAAGGGATAGAATTAATCAGAAACTGAAAGCTTTGCAGAGGTTGGTGCCCAAGGCCAGCAAGATGTCTATGATGGCCAGAATGGGCCTTGGGCTGGTCTCAGGCTCGGGCCCAGGCCCAGGCTTGGCAGGCCTGCTTAACGCCAACACCACCATGGCTGCACGCCCACCAGTTCTTGCTTCTATTCCACAACTCACAGTTGCAGCAGCTCCTGCTCTTACTCCTTCCTTCATGATATCCCCATTGGTTCAAGCCCATGCTCCTCCTCCTCCTCCTCCAAAGCCTGAACCTGCATCTGCAACTACCTCCAATGCCTCAGTTTCTTTGCCTGATCCTTATGCCACTTTTCTTTCACAAAATATATATAATGGTGCAGTCAGTGAATATGGATATTCTGAGCAACATGGCGGCGCTTTACCGGCAACAGATGAGACAGAACAATCGGAACATGAGCAGCCTGTCGCAACAACAACATCATGGACAAGGGAATTGAGAAGAGAAGAAACCAGAAATGCTGCTGCTCTGAGTGATGAAGAAACCAACAAGTTTACAATGTAA 1386 0.4466 MMEENRLKQRRVSLSDPPSQPIVEDEAVIRDDKHGIAVAAATLAIYSLEQAELLNLQKMREGGSWKKKSFREDDHEGQFHVRLSSAGKSPSPPNPIRIARYQKHKEIHIPSQQNTVNSRAECWKMAKIQKRYEKIKFKILVWEGEKKMQAILQKDRTKNELEQKRAMAMLHHQNKITMINRIAQRARAKLEDKRRKEESKVKEKANKIIKTGSPAAWLIVCIHVQVIFQAAESATDIMVLENQDQEEDRDTKEETGRSNSTRRNRAAAVHNQSEQRRRDRINQKLKALQRLVPKASKMSMMARMGLGLVSGSGPGPGLAGLLNANTTMAARPPVLASIPQLTVAAAPALTPSFMISPLVQAHAPPPPPPKPEPASATTSNASVSLPDPYATFLSQNIYNGAVSEYGYSEQHGGALPATDETEQSEHEQPVATTTSWTRELRREETRNAAALSDEETNKFTM 461
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele17g0919 461 Pfam Helix-loop-helix DNA-binding domain 269 295 IPR011598 GO:0046983
Lele17g0919 461 Coils Coil 271 291 - -
Lele17g0919 461 MobiDBLite consensus disorder prediction 1 23 - -
Lele17g0919 461 MobiDBLite consensus disorder prediction 409 461 - -
Lele17g0919 461 Gene3D - 255 304 IPR036638 GO:0046983
Lele17g0919 461 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 265 349 IPR011598 GO:0046983
Lele17g0919 461 MobiDBLite consensus disorder prediction 242 260 - -
Lele17g0919 461 MobiDBLite consensus disorder prediction 360 374 - -
Lele17g0919 461 Coils Coil 180 207 - -
Lele17g0919 461 PANTHER TRANSCRIPTION FACTOR PIF1-RELATED 164 297 IPR031066 -
Lele17g0919 461 MobiDBLite consensus disorder prediction 359 382 - -
Lele17g0919 461 MobiDBLite consensus disorder prediction 241 281 - -
Lele17g0919 461 MobiDBLite consensus disorder prediction 437 451 - -
Lele17g0919 461 Pfam Remorin, C-terminal region 118 213 IPR005516 -
Lele17g0919 461 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 258 300 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele17g0919 Lele-ChrLele17 20285845 20295295 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele17g0919 239 297 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G00050 55.000 4.35e-13 68.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lele17g0919 Remorin_C 7e-19 No_clan