Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele17g0910 ATGAGCTTAATGATGCTAAGTAGGGACGTTGGTCATTGGGGTGGTTTGAATTCTCTTGTTGAGTCCTCTGATAACAATTCTGCATATTTCGAAGCTCGATCTTATGTGGTTCGAACTCCTCTGAGCAGCAAAATTGAAACGGGTAAAGTAAAACTGACTATTGGCAGTAACTCAGATTCTGCGAATTTGAACTCGAAAGGGAAGAAACCTGAGAGTTTAGCGATCAAAGCGAGCAAAACAACAGTTTCCATTAATGGGTTGGTCAAGAACTGTAAAGAAAAGAAGCTTCATCGTGAGCTTGATAACCAGTCGACATTGGAGGATTCTGAAGACGAAGGAGAGTGGAAAAGCGAAGCCAATGGAACAGAACTAGATTCATCAGTAAAGAGAAGGTTCTCAGAATCTGAGGTGAAGTCATCAAATAATTGCAAGAAAGGGAAGTTCAAGTGTACTACTTGCAACAAGATCTTCCATTCGTACCAAGCTCTGGGAGGCCATAGATCTAGTCATAAGAAGCTCACAGGCTGCTCTGCTTCGAGAAACGAGAGCAGCGAAAATAGCATAGAAACAGACCTCAACAATCGCTATGTAATCGAGAAACAAGAGCTTATTACTGGTTCTGTTAATTTCGAGAACGAGGAAGAGATAATCACAGAACCCAATAAGAAGAACAAAGTACACGAGTGTCCAATTTGCCTCAAGATTTTTCCATCCGGGCAAGCTTTGGGTGGTCACAAGAGATCTCATTTCACTTCTGAAGTACTTGAGAAACCAGTTCAGGAAATCAGAGACTTCCTTGATCTGAATCTTCCAGCTTCTGCAGAAGAAGAAAGCAACAGTCAAGTAATGGAGAATTACCCACCACCATGGTGGGTGGGCAAGCAAGAGGCAGCACTGGTTGGCCTCATATCTAACTGA 918 0.4248 MSLMMLSRDVGHWGGLNSLVESSDNNSAYFEARSYVVRTPLSSKIETGKVKLTIGSNSDSANLNSKGKKPESLAIKASKTTVSINGLVKNCKEKKLHRELDNQSTLEDSEDEGEWKSEANGTELDSSVKRRFSESEVKSSNNCKKGKFKCTTCNKIFHSYQALGGHRSSHKKLTGCSASRNESSENSIETDLNNRYVIEKQELITGSVNFENEEEIITEPNKKNKVHECPICLKIFPSGQALGGHKRSHFTSEVLEKPVQEIRDFLDLNLPASAEEESNSQVMENYPPPWWVGKQEAALVGLISN 305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele17g0910 305 Pfam C2H2-type zinc finger 148 172 - -
Lele17g0910 305 Pfam C2H2-type zinc finger 226 249 - -
Lele17g0910 305 ProSitePatterns Zinc finger C2H2 type domain signature. 229 249 IPR013087 -
Lele17g0910 305 ProSiteProfiles Zinc finger C2H2 type domain profile. 227 254 IPR013087 -
Lele17g0910 305 SUPERFAMILY beta-beta-alpha zinc fingers 148 249 IPR036236 -
Lele17g0910 305 ProSitePatterns Zinc finger C2H2 type domain signature. 150 170 IPR013087 -
Lele17g0910 305 Gene3D Classic Zinc Finger 145 249 - -
Lele17g0910 305 ProSiteProfiles Zinc finger C2H2 type domain profile. 148 170 IPR013087 -
Lele17g0910 305 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 1 280 - -
Lele17g0910 305 SMART c2h2final6 227 249 IPR013087 -
Lele17g0910 305 SMART c2h2final6 148 170 IPR013087 -
Lele17g0910 305 MobiDBLite consensus disorder prediction 115 131 - -
Lele17g0910 305 MobiDBLite consensus disorder prediction 100 131 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele17g0910 Lele-ChrLele17 20242276 20243193 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele17g0910 145 284 C2H2 Transcription Factor Family AT3G60580 39.456 9.24e-27 104
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lele17g0910 zf-C2H2_6 4.8e-10 CL0361