Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele17g0899 ATGTCCTTTCCGACCCGAAAGATCGAGCGTGGTACGATTCCCTGCGATCTAAGATTCTCTATTCTGACCCAATTCAGTCGGAAACTGGGCCTCCACCTTTCTTCCTTCTTCTCCGGCAGTATTTATTCTGGGTATTCGAACACCGACAAGGGGTTCTATAAGGTCTATTCTGACGTTTGCGATAAAATTCATGCCAACGAAATTAACTTCGCGAAGAAATTAGGGCCTGGTATCGATGTTGTTCAATCATCACCAGTAATGGGAAATTTGGATAGCCCTTATGCCCAAACTTCAGCTTTCTACAATTACGGGTTGGGATTTTCTACGATTCTGGATTTTTCCTGGATGGACGCGTATGATATTGTCATGGCTAGTCCCAGCAGGAAGTTGAGGCGGATTATGGAGGAAAAGAACAACGAGATCAGAAAGAAGGCAAAGAAAGAGTACAATGACACTGTGGAAAAGAAGAAAGAGAAAGAGATGGAGAGGAAGAAGCAGATGGAGGAGGAGAAGAGGGAGAGAGCAATGCCGTATGAAGAGCCTGATTGGGTCAAAGTAGAGGAGTATGAAGAAGATGAGGCTGATGACTGGTTCAAGGAGGAGAGTAATATGAAGAATAATGCCAAGAATGAGTTTTATTGTGAATTGTGTAGGAAGAAGTTCAAGAGTGAGAAGCAGTGGAAGAACCATGAGCAATCAAAGAAGCATAAGGAGAAATGGACATGGGGACAACATTCTATGACTTCTCGTATTTCCATTTTTATGGCTACGCTTATGTGGTTTTCTAATCTGATTCACAGTGACATCGAAAAGTCTTGGCCAATGGCAACACTGTATGAAGCCTGCGGAGTGGAGTTTGATTCAAGCGCGTTTGTGATGAAAATGATGCCACGTGCAAATGGCCACAACCACAGAGCCGCACCCTTGTAA 930 0.4376 MSFPTRKIERGTIPCDLRFSILTQFSRKLGLHLSSFFSGSIYSGYSNTDKGFYKVYSDVCDKIHANEINFAKKLGPGIDVVQSSPVMGNLDSPYAQTSAFYNYGLGFSTILDFSWMDAYDIVMASPSRKLRRIMEEKNNEIRKKAKKEYNDTVEKKKEKEMERKKQMEEEKRERAMPYEEPDWVKVEEYEEDEADDWFKEESNMKNNAKNEFYCELCRKKFKSEKQWKNHEQSKKHKEKWTWGQHSMTSRISIFMATLMWFSNLIHSDIEKSWPMATLYEACGVEFDSSAFVMKMMPRANGHNHRAAPL 309
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele17g0899 309 ProSitePatterns Zinc finger C2H2 type domain signature. 214 236 IPR013087 -
Lele17g0899 309 Pfam Zinc-finger double-stranded RNA-binding 212 237 IPR022755 -
Lele17g0899 309 Coils Coil 127 174 - -
Lele17g0899 309 PANTHER DNAJ PROTEIN JJJ1 HOMOLOG 154 240 IPR044648 -
Lele17g0899 309 ProSiteProfiles Zinc finger C2H2 type domain profile. 212 241 IPR013087 -
Lele17g0899 309 SMART ZnF_U1_5 209 243 IPR003604 GO:0003676|GO:0008270
Lele17g0899 309 Gene3D Classic Zinc Finger 198 247 - -
Lele17g0899 309 SUPERFAMILY beta-beta-alpha zinc fingers 199 250 IPR036236 -
Lele17g0899 309 MobiDBLite consensus disorder prediction 151 174 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele17g0899 Lele-ChrLele17 20165176 20167824 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele17g0899 33 248 C2H2 Transcription Factor Family AT1G74250 52.893 3.30e-67 219
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lele17g0899 zf-C2H2_jaz 1.5e-10 CL0361