Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele17g0894 ATGTCTCCGATTTCGGTTTCCTTTACAGTGACTACAATGGATAGGCGGAAACAAAACGACATCCAGGTTTTAGCGAAGTATCTCCACTCCCACAGAGACGTTGTGAAGCAAGAGAATATTATTGGGATGGCTTTCTTTGGTAGAGTTGGGAATATACTAAGACAGGCTGCAAATAAGCAGCTCAGTTCAGAATTACGTTCAGCTCCATCTATGTTCCAGACTATACGGTGCATGTCATCTGCCGCAAGTTCAAGGGTGTTTGTAGGAGGACTGTCATATAACACTGATGAGCAAGGTTTGAGGGAAGCTTTTGCGAAATATGGTGACGTAGTTGATGCTAGGGTAATTATGGATCGTGAGACTAATAGATCTAGAGGGTTTGCCTTTGTCACTTTCACATCTGTTGAGGAGGCATCAAGTGCCATTCAGGCCTTAGATGGACAGGATCTCGATGGTCGCCGAGTTCGGGTAAATTATGCTAATGAGAGGCCTCAATATGGTGGTGGTTTTGGTGGTTCTTATGGCAGTGCTCCATATGGTGGTGGTGGTGGTGCTGCTGTCTATGGAGGCGGTTATGGTAACTCTCCCTATGGTGGTTCTGGTGCGTATGGTGGCAATGCTGCTGGAGGTTATGGTGGTGGCGGATATGGGGGAGGAAGTTATGGATCAGGTGGCAGCACTGGCAATAACTATGCTTCTAACAATTTTGGAGCCGGAGCTGCAGGAGGCAGTTATGGAAATGATGGTAACTTTGCAAGTGGAACCCCTTATGGTGGTGGAAGTGGTGGAGGATATGGTGGTAGCAGTGGCAGTGGAGCTGCTGCTGACAGCTTTGGAACTGGAATTGCTGGTGGTGGCTTTGACAGAAGCAATTATGCAAATGATGGGAACTTTGCAAGCGGAAGCCCTTATGCTGGTGGCAGCAGTGGAGGATATGGCGGCAACAGCAGATCCTTTGATGTTGCTGCTGGTGGTGGACGTAGTGATAACTATGGAAGTGCTCCTAGTTTTGGTACTGCTGCAGGTGGTGGCAGTGATAGCTTTGGCAGAGCTGCTGGATTTGGCAGCAGTGATGACTTTGGCGGTTCTGCTGATTTTGGTAGCAGCAGTGGTCCAGGTTCAGGCAGTGGCGTTGCCGGTGGATACAATGGAGACATAGGCAGCAGTGGTCAATTGTATGGCAAAGAAAGCGACAATATAGGTCAGGATATTGGAGATGTTGGGGGCACAATAGAGGAAAGCTTCCGGGATGATGATGATGATGCTGGCCCTTTTGCCAAAAGGGCTTGA 1290 0.4853 MSPISVSFTVTTMDRRKQNDIQVLAKYLHSHRDVVKQENIIGMAFFGRVGNILRQAANKQLSSELRSAPSMFQTIRCMSSAASSRVFVGGLSYNTDEQGLREAFAKYGDVVDARVIMDRETNRSRGFAFVTFTSVEEASSAIQALDGQDLDGRRVRVNYANERPQYGGGFGGSYGSAPYGGGGGAAVYGGGYGNSPYGGSGAYGGNAAGGYGGGGYGGGSYGSGGSTGNNYASNNFGAGAAGGSYGNDGNFASGTPYGGGSGGGYGGSSGSGAAADSFGTGIAGGGFDRSNYANDGNFASGSPYAGGSSGGYGGNSRSFDVAAGGGRSDNYGSAPSFGTAAGGGSDSFGRAAGFGSSDDFGGSADFGSSSGPGSGSGVAGGYNGDIGSSGQLYGKESDNIGQDIGDVGGTIEESFRDDDDDAGPFAKRA 429
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele17g0894 429 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 84 162 IPR000504 GO:0003723
Lele17g0894 429 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED 47 238 - -
Lele17g0894 429 MobiDBLite consensus disorder prediction 362 376 - -
Lele17g0894 429 MobiDBLite consensus disorder prediction 359 429 - -
Lele17g0894 429 SMART rrm2_1 85 158 IPR003954 GO:0003676
Lele17g0894 429 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 86 156 IPR000504 GO:0003723
Lele17g0894 429 SMART rrm1_1 85 158 IPR000504 GO:0003723
Lele17g0894 429 Gene3D - 49 177 IPR012677 -
Lele17g0894 429 FunFam Glycine-rich RNA-binding protein 3, mitochondrial 54 185 - -
Lele17g0894 429 CDD RRM_HP0827_like 85 161 - -
Lele17g0894 429 SUPERFAMILY RNA-binding domain, RBD 82 186 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele17g0894 Lele-ChrLele17 20139024 20141739 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele17g0894 84 199 Eukaryotic Initiation Factors Gene Family AT3G16380 34.146 1.64e-10 60.8