Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele17g0890 ATGGCGAAATCAGTTACCTCAGACGCGATTTCGATATTGCTTGCCAACCCGTCACCAGATTCCTCCTCGGAGCTTCCTGAAATCATCGTCCAAGTTCTGGATCTCAAGCAAAGCGGCAACAGATTCATGTTCACTGCTAACGATGGAAAGATGAAGTTAAGGGCAATCCTCCCTTCTAATCAGAATTCCCAAGTCATTTCGGGAAGTGTTCAGAACCTGGGTCTTATCCGCGTAGTTGATTATACTCTCAATGATATTCCAAATAAGTCAGAGAAATATCTTATTGTTACAAAATGTGAATCGATCTCTCCTGCCCTTGACATGGAGATAAAAATAGAAATCGAGAGTGAGAGCCCCGCTATGCTTTTGAATCCAAAGCAGGAGGGTGAAACCAAAAGCGAGGTGAAAAGTGAAGCTGCTGGCATTATTTTGAGACCGAAGCAAGAGATGGGGTCCAAGTCTGCCGCTCAGATTGTACACGAACAACATACAAACACCGCCCCTACTGCACGGATGGCCATGACACGCAGGGTGCTCCCTCTTGTTTCCTTAAACCCTTATCAAGGTAATTGGACAATAAAGGCTCGTGTAACAAGCAAAGGGAACATGCGTTCCTACAAGAATGCTAGAGGGGAAGGTTGTGTCTTCAACGTGGAATTGACAGATGAAGATGGCACTCAAATTCAAGCAACAATGTTTAACGAGGCTGCCAGGAAATTTTATGACAGATTTGCGCATGGGAAGGTTTACTACATTTCCAAGGGAACTTTAAAGGTGGCTAACAAACTGTTCAAAACTGTCCAAAACGATTATGAGATGACGTTGAATGAGAATTCTGAGGTGGAAGAGGCAGCCAATGAAGAAAGTTTTGTTCCAGAAACAAAATTTAACTTTGTCCTGATTGATCAGCTGGGTCCTTTTGTCAATAGGGGCGACCTTGTTGATGTTGTAGGAGTTGTTCAGAATGTGTCTTCCACCATGAGCATTCGAAGGAAGAGTAACAACGAGAGTGTTTCAAAGCGTGATATTACTATTGCTGATGAAACAAAGAAGACAGTGGTTGTGTCTTTGTGGAGTGAACTTGCAACTAATGTAGGGCAAGACTTGCTGGACAATGCTGATAAATCTCCAATAGTTGCAATCAAGTCTCTCAAAGTTGGGGATTTTCAGGGTGTTTCCTTGTCAACTATAAGCAGAAGTGTAGTTCAGATAAATCCTGATATTCCTGAAGCAAAAAAGCTTAGATGCTGGTATGAGTCTGAAGGTAAAGACGCTCCAATGGCTTCCATTGGCTCTGGTGCATCTGCAACAAAAAATGGAACTAGATCAGTGTACTCTGACCGTATTTCACTAGCTCAAATAACCTCGAACAAATCCTTGGGAGAGGACAAGCCTGCATTTTTCAGTATCAGGGCACATATAAGCTCCATTAGGCCTGATCAGACAATGTGGTATAGAGCTTGTACAACTTGCAACAAGAAAGCCACTGAAGCCATTGGGTCTGGCTATTGGTGTGAAGGCTGCCAGAAAAATGTTGAAAGCACTTTAAGGTATATCTTGGTTGCAAGAGTTTCTGATGCAAGTGGTGAAGCTTATGTCTCGATCTTCAATAATGAAGCAGAGGAGATTGTTGGGTGTTCTGCTAATGAGCTAGATAGCCTAAAATCACAGGAGGGAGAAGATAATCCATACCAAATGAAATTGAAACAAGCAACTTGGACCCCTCATCTATTCCGTGTTAGTGTCTCTCTGAATGAGTATATGAACGAAAAGAGGCAGAGGATAACTGTCCGAGCGGTTGCTCCAGTTGATTATGCTGCTGAGTCAAGAATTCTGCTGGAAGAGATTTCAAAGATGACAGCTTCACAATAA 1872 0.4274 MAKSVTSDAISILLANPSPDSSSELPEIIVQVLDLKQSGNRFMFTANDGKMKLRAILPSNQNSQVISGSVQNLGLIRVVDYTLNDIPNKSEKYLIVTKCESISPALDMEIKIEIESESPAMLLNPKQEGETKSEVKSEAAGIILRPKQEMGSKSAAQIVHEQHTNTAPTARMAMTRRVLPLVSLNPYQGNWTIKARVTSKGNMRSYKNARGEGCVFNVELTDEDGTQIQATMFNEAARKFYDRFAHGKVYYISKGTLKVANKLFKTVQNDYEMTLNENSEVEEAANEESFVPETKFNFVLIDQLGPFVNRGDLVDVVGVVQNVSSTMSIRRKSNNESVSKRDITIADETKKTVVVSLWSELATNVGQDLLDNADKSPIVAIKSLKVGDFQGVSLSTISRSVVQINPDIPEAKKLRCWYESEGKDAPMASIGSGASATKNGTRSVYSDRISLAQITSNKSLGEDKPAFFSIRAHISSIRPDQTMWYRACTTCNKKATEAIGSGYWCEGCQKNVESTLRYILVARVSDASGEAYVSIFNNEAEEIVGCSANELDSLKSQEGEDNPYQMKLKQATWTPHLFRVSVSLNEYMNEKRQRITVRAVAPVDYAAESRILLEEISKMTASQ 623
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele17g0890 623 CDD RPA1_DBD_C 451 618 IPR013955 -
Lele17g0890 623 Pfam OB-fold nucleic acid binding domain 191 277 IPR004365 GO:0003676
Lele17g0890 623 FunFam Replication protein A subunit 433 619 - -
Lele17g0890 623 SUPERFAMILY Nucleic acid-binding proteins 446 619 IPR012340 -
Lele17g0890 623 Pfam Replication factor-A protein 1, N-terminal domain 5 102 IPR007199 GO:0003677|GO:0005634|GO:0006260
Lele17g0890 623 CDD RPA1_DBD_A 180 283 - -
Lele17g0890 623 TIGRFAM rpa1: replication factor-a protein 1 (rpa1) 3 618 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Lele17g0890 623 SUPERFAMILY Nucleic acid-binding proteins 179 287 IPR012340 -
Lele17g0890 623 Gene3D - 291 430 IPR012340 -
Lele17g0890 623 Gene3D - 431 619 IPR012340 -
Lele17g0890 623 Gene3D - 177 286 IPR012340 -
Lele17g0890 623 PANTHER REPLICATION FACTOR A 1, RFA1 191 582 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Lele17g0890 623 CDD RPA1_DBD_B 324 419 - -
Lele17g0890 623 FunFam Replication protein A subunit 177 286 - -
Lele17g0890 623 FunFam Replication protein A subunit 4 114 - -
Lele17g0890 623 Pfam Replication factor-A C terminal domain 467 611 IPR013955 -
Lele17g0890 623 SUPERFAMILY Nucleic acid-binding proteins 296 424 IPR012340 -
Lele17g0890 623 FunFam Replication protein A subunit 290 429 - -
Lele17g0890 623 Pfam Replication protein A OB domain 308 405 IPR031657 -
Lele17g0890 623 Gene3D - 4 113 IPR012340 -
Lele17g0890 623 SUPERFAMILY Nucleic acid-binding proteins 1 111 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele17g0890 Lele-ChrLele17 20120714 20124033 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele17g0890 1 623 Core DNA Replication Machinery Family AT5G08020 66.294 0.0 874