Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele17g0882 ATGCTCAGCGAATCGCCGAATCCAATTTATTTATCTCGTGGTCGTTCACAAGCCACGCGCATCGAGCTCCGTTCGAGGATGCGGGAGTCCAGAAGCGAAAGAGCTCCTCTCCTGGAGAACGGAGAAGGGAGGAAGAGAGATGATGCCTCAGCTGATCAGCAGTTGACAGACCTTGAACATGGTGATGCTCTACCGGCTGCAAATGTGGGATTCTGTCGAGTGCTTTCACTTGCAAAGCCTGATGCTGGGAAGTTGGTACTTGCGACAGTGGCTCTGTTGGTTGCATCCACTTCAAGTATCTTAATTCCAAAATTTGGTGGGAAGATAATTGACATTGTGTCTGGAGATATTTCAACTCCTGAGGAGAAAGCTAAAGCTCTGGATGCTGTCAAGAGCACCATACTATCTATCTTTCTGATTGTTGTTGTCGGTTCAGTTTCCACAGCACTGCGAGCATGGCTTTTCTCTTCTGCCAGTGAAAGGGTTGTTGCGCGGTTGAGAAAAAGATTGTTTAGTCACCTCATAAACCAGGAGATAGCCTTCTATGATGTTACTAGAACTGGAGAACTTCTAAGCAGGTTATCTGAAGATACACAGATAATAAAGAATGCCGCAACTACCAATCTCTCTGAAGCCTTGAGAAACTTATCAACTGCTTTTATCGGACTCTCCTTCATGTTTGCAACATCATGGAAGTTAACTTTATTGGCTTTGGCTGTTGTACCTGCTATTTCTGTTGCTGTTCGTAAATTTGGCCGGTTCTTGCGTGAACTTTCTCACAAAACTCAAGCTGCAGCTGCAGTAGCTTCTTCGATCGCTGAGGAATCCTTTGGTGCTATAAGAACAGTGAGATCTTTTGCCCAAGAAGAACATGAAATAGCACGGTATTCTGAGAAAGTTGAAGAAACACTTAAGCTTGGACTTAAACAGGCTAAAGTGGTTGGACTCTTTTCTGGAGGCCTCAATGCAGCGTCTACGCTGTCTGTTATCGTGGTTGTTATATACGGAGCTAACTTGACAATCAAGGGTGCCATGTCTGCGGGTAATCTTACATCTTTCATTCTCTATAGTCTCACAGTGGGATCTGCTGTATCTGGTCTGTCATCTCTGTATACAGTAACAATGAAAGCTGCCGGTGCTAGCAGACGGGTATTTCAACTTCTGGATCGAGTCTCTTCCATGCCCAAGTCAGGAAACAAGTGTCCTTTGGGTGATCAAGATGGTGAAGTGGAATTAGATGATGTTTGGTTTGCCTATCCATCACGTCCAGGTCATACAATACTCAAGGGAATCACATTGAAACTGCAGCCTGGCTCAAAGGTTGCTCTTGTTGGTCCTAGTGGTGGTGGAAAGACTACTATAGCTAACTTGATTGAAAGATTTTATGACCCAACCAAGGGAAAGATCCTGCTGAATGGGGTTCCTCTGGTAGAAATATCACATGAGCATCTACACAAAAAGATCAGTATAGTGAGTCAGGAACCTATCCTTTTCAACTGTTCCATAGAGGAGAACATAGCTTATGGACTTGATGGCAAAGTTAATCCTGTTGATATAGAAAATGCAGCTAAAATGGCCAATGCACATGAGTTTATATCGAAGTTTCCTGATAAATACCAGACACATGTTGGAGAACGTGGAGTACGGCTTTCAGGAGGACAAAAGCAAAGAATAGCTATTGCTAGGGCCCTGCTTATGGACCCAAAAATTCTTCTCCTGGATGAAGCCACTAGTGCCTTGGATGCTGAAAGCGAATACCTAGTACAAGATGCTATGGATTCTTTAATGAAGGGAAGGACAGTTCTGGTTATAGCTCATAGGCTATCTACTGTTAAAAGTGCAAATATTGTAGCAGTTATTTCTGATGGTCAAATAGTTGAAAGTGGCACCCATGATGAACTTCTCAGCAAGAATGGTGTTTATACTGCATTAGTCAGAAGACAGCTACAAACAGCAAAAACTGAAACTTAG 1971 0.4338 MLSESPNPIYLSRGRSQATRIELRSRMRESRSERAPLLENGEGRKRDDASADQQLTDLEHGDALPAANVGFCRVLSLAKPDAGKLVLATVALLVASTSSILIPKFGGKIIDIVSGDISTPEEKAKALDAVKSTILSIFLIVVVGSVSTALRAWLFSSASERVVARLRKRLFSHLINQEIAFYDVTRTGELLSRLSEDTQIIKNAATTNLSEALRNLSTAFIGLSFMFATSWKLTLLALAVVPAISVAVRKFGRFLRELSHKTQAAAAVASSIAEESFGAIRTVRSFAQEEHEIARYSEKVEETLKLGLKQAKVVGLFSGGLNAASTLSVIVVVIYGANLTIKGAMSAGNLTSFILYSLTVGSAVSGLSSLYTVTMKAAGASRRVFQLLDRVSSMPKSGNKCPLGDQDGEVELDDVWFAYPSRPGHTILKGITLKLQPGSKVALVGPSGGGKTTIANLIERFYDPTKGKILLNGVPLVEISHEHLHKKISIVSQEPILFNCSIEENIAYGLDGKVNPVDIENAAKMANAHEFISKFPDKYQTHVGERGVRLSGGQKQRIAIARALLMDPKILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTVKSANIVAVISDGQIVESGTHDELLSKNGVYTALVRRQLQTAKTET 656
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele17g0882 656 FunFam ABC transporter B family member 25 408 650 - -
Lele17g0882 656 SMART AAA_5 437 631 IPR003593 -
Lele17g0882 656 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 410 647 IPR003439 GO:0005524
Lele17g0882 656 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 401 648 IPR027417 -
Lele17g0882 656 CDD ABC_MTABC3_MDL1_MDL2 410 648 - -
Lele17g0882 656 Gene3D ABC transporter type 1, transmembrane domain 136 407 IPR036640 GO:0005524|GO:0016020
Lele17g0882 656 PANTHER ATP-DEPENDENT PERMEASE MDL1, MITOCHONDRIAL 27 653 - -
Lele17g0882 656 MobiDBLite consensus disorder prediction 1 51 - -
Lele17g0882 656 ProSitePatterns ABC transporters family signature. 550 564 IPR017871 GO:0005524|GO:0016887
Lele17g0882 656 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 86 376 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Lele17g0882 656 MobiDBLite consensus disorder prediction 19 51 - -
Lele17g0882 656 Gene3D - 408 654 IPR027417 -
Lele17g0882 656 CDD ABC_6TM_AtABCB27_like 88 384 - -
Lele17g0882 656 Pfam ABC transporter transmembrane region 85 360 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Lele17g0882 656 Pfam ABC transporter 428 578 IPR003439 GO:0005524
Lele17g0882 656 PIRSF ABC_prm/ATPase_B 16 656 - -
Lele17g0882 656 FunFam ABC transporter B family member 25 137 407 - -
Lele17g0882 656 SUPERFAMILY ABC transporter transmembrane region 73 389 IPR036640 GO:0005524|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele17g0882 Lele-ChrLele17 20055650 20060329 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele17g0882 81 656 Calmodulin-binding Proteins AT2G36910 38.185 1.27e-105 346