Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele17g0878 ATGGAGTCTTGGAGTTATGATTCTGAAGAAAAAGGGTTTGTGTCCAACGATACACTCTCACCTCCTAATTCACTTTCCAGAAGTAAAGGTTCCATCTTGGGATGGGAATTGAAGAGTCCCTCTGGAATTTCCAGCGACATGTTATCCTCGGCTCAACCAAACGTAGGAAATCAAGGTTTTGAGGAAATGGGTTTTCCAGAAATGTTGGGTAAACAATTGTCCGATGATCCAATTAGCACTGTGTCCAACAGAAGGCTCGAAGGTGGTCCTTTTATGGCTGCTGCCCCAATTGCAATTTCTGGAGTTGAAGACTCTAATTCGAAGCTTTCTAACTCCGTGGTTGAATCCAACGGTCGAGCTTCACTTATTGATTTGAAGCTGGGACGATTTGGAGATCCCAGAGAAGCCGTGGATTCAGCATTCTCCAGAGGAACCCCTATTTTGTCTTCCTCAGAATCATCGGTTCCGACCAAGAGAGTACGGGGTTCGGGGGTTCATTCACAAACCGCGTACTGTCAAGTTTATGGATGTAACAAAGATCTAAGTGCCTCTAAAGACTACCACAAGAGGCACAAAGTTTGCGAGGTTCACTCCAAGACTTCCAAAGTTATAGTCAACGGCATCGAACAGAGATTTTGTCAGCAATGTAGCAGGTTTCACTTGCTGGCTGAATTTGATGAAGGTAAGCGCAGCTGTCGCAAACGCCTTGCAGGTCATAATGAGCGACGGCGAAAGCCACAAGTTGGTATTCACTCTGCAAAGGCTGGAAGATTGCTTCAACCATACAGTGATAGTAGATTCCAGGGCACCATGCTAACGACCGCATCTTTTATCTGCCAAGAGATACTTCCTACCGGGACTTTGCGCTCTGATAGATATGGAACGAATGACTGTTGGAGACCTATAAAGAATGAAGATGGGACTGATTTTAGGCATCTTCCTGGTGTTCCTATCTCAAATGGACACCCTCAGTCAACATCTCTATTCCATCCATTTAACGAAAGGCAATTTCCTTTTCTTCATGAAAATGGCGCTACATCGAGCACTGGAAGCATCTTCTGTGAGAACAACAGTCAGCATCCACCTCCTGCCATTGTACTCTGCAAGAGGAAACAGGAAAGGGCAAACCTTAAAGATGGCATTTTCTTCCATGATTACCAACTAATCTAG 1170 0.4487 MESWSYDSEEKGFVSNDTLSPPNSLSRSKGSILGWELKSPSGISSDMLSSAQPNVGNQGFEEMGFPEMLGKQLSDDPISTVSNRRLEGGPFMAAAPIAISGVEDSNSKLSNSVVESNGRASLIDLKLGRFGDPREAVDSAFSRGTPILSSSESSVPTKRVRGSGVHSQTAYCQVYGCNKDLSASKDYHKRHKVCEVHSKTSKVIVNGIEQRFCQQCSRFHLLAEFDEGKRSCRKRLAGHNERRRKPQVGIHSAKAGRLLQPYSDSRFQGTMLTTASFICQEILPTGTLRSDRYGTNDCWRPIKNEDGTDFRHLPGVPISNGHPQSTSLFHPFNERQFPFLHENGATSSTGSIFCENNSQHPPPAIVLCKRKQERANLKDGIFFHDYQLI 389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele17g0878 389 SUPERFAMILY SBT domain 170 250 IPR036893 GO:0003677|GO:0005634
Lele17g0878 389 Gene3D - 162 233 IPR036893 GO:0003677|GO:0005634
Lele17g0878 389 MobiDBLite consensus disorder prediction 1 30 - -
Lele17g0878 389 ProSiteProfiles Zinc finger SBP-type profile. 169 246 IPR004333 GO:0003677
Lele17g0878 389 FunFam Squamosa promoter-binding-like protein 14 163 233 - -
Lele17g0878 389 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 31 275 IPR044817 GO:0003677
Lele17g0878 389 MobiDBLite consensus disorder prediction 8 30 - -
Lele17g0878 389 Pfam SBP domain 172 245 IPR004333 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele17g0878 Lele-ChrLele17 20035159 20038318 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele17g0878 1 288 SBP-box Gene Family AT1G69170 39.236 1.01e-51 176
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Lele17g0878 SBP 8.6e-32 No_clan