Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele17g0877 ATGGGAAGAGGCAGGGTTGAGCTCAAGAGAATAGAGAACAAAATCAATAGGCAAGTTACATTCGCTAAGAGAAGAAATGGTCTGCTCAAGAAGGCTTATGAGCTCTCTGTCCTCTGTGATGCCGAAGTTGCCCTCATCATCTTCTCCAATCGTGGAAAGCTCTATGAGTTCAGTAGTGGCTTCAGCATGTCGAAAACACTGGAGAAGTACCAGAAATACAGCTATGGTGCACTGGAATCCAGCCAGCCAATGAGTGACACTCAGAGTAGCTATCAGGAATACTTGAGACTTAAAGCTAGGGTCGAAGTCCTGCAACGTTCGCAGAGGAACTTTCTGGGGGAAGATCTGGCCCAAATGAATACAAAGGAGCTGGAGCAGCTTGAGAATAAAGTTGAGGCAGCACTGAAGAATATCAGGTCCACAAAGACTCAGTATTTGCTTGACCAGCTTGCTGATCTTCAGAACCGGGAGAAAGTGCTGGAGGAAACTAATAGAGCTTTGAGGAGTAAGCTTGGTTCTTTGAACAATGAACCACAGTTAGAAGAAAGAAGCAACTCGCAACAAGTTCCTCTAAGAATGGGATGGGAAGGTGCAGGAGGGTCTGAGACGATCCCTTACAGTCGCTTTGCTGTTCAGTCTGAAGCATTTTTCCATCCTTTGGGAGTCAATCCCAATTTGCAAATCGGATATAATCATCAGGTGGAAGGGGAGGATATAAATGTTGGAGGAGCGGCATTGAACGTTCATGGATTCTTGCCTGGTTGGATGCTTTAA 774 0.4561 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFSSGFSMSKTLEKYQKYSYGALESSQPMSDTQSSYQEYLRLKARVEVLQRSQRNFLGEDLAQMNTKELEQLENKVEAALKNIRSTKTQYLLDQLADLQNREKVLEETNRALRSKLGSLNNEPQLEERSNSQQVPLRMGWEGAGGSETIPYSRFAVQSEAFFHPLGVNPNLQIGYNHQVEGEDINVGGAALNVHGFLPGWML 257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele17g0877 257 Coils Coil 150 177 - -
Lele17g0877 257 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Lele17g0877 257 Coils Coil 117 144 - -
Lele17g0877 257 ProSiteProfiles K-box domain profile. 87 177 IPR002487 GO:0003700|GO:0005634|GO:0006355
Lele17g0877 257 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 176 - -
Lele17g0877 257 Pfam K-box region 85 171 IPR002487 GO:0003700|GO:0005634|GO:0006355
Lele17g0877 257 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Lele17g0877 257 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Lele17g0877 257 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Lele17g0877 257 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Lele17g0877 257 CDD MADS_MEF2_like 2 78 IPR033896 GO:0000977|GO:0045944
Lele17g0877 257 Gene3D - 13 84 IPR036879 GO:0003677|GO:0046983
Lele17g0877 257 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Lele17g0877 257 FunFam MADS-box transcription factor 1 13 89 - -
Lele17g0877 257 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Lele17g0877 257 SUPERFAMILY SRF-like 2 77 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele17g0877 Lele-ChrLele17 20021286 20025556 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele17g0877 1 257 MADS-box Gene Family AT5G15800 55.351 1.93e-91 269
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Lele17g0877 K-box 2.7e-26 No_clan