Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele17g0853 ATGATTCTACAGCCGGAGCAGCAGCAACAGGCAGGTCCCGGAGAGGCGCAGATGCCGGCGATGACTACTCCGGAAGCTGTACCCACAGCTAGTGCCTGGGAATCTTCTGGTTCTATTGGTCCTTTCTTTGCTGTCATTTCTGTGCTTACTGCTCTCGCTGTGATTTCCTGCTATTTGGGACGAAAGTGGAACCCTAGCCCGGACAGCATCGAGAATGACAACAGAAGCTGTTTTGGCTGGCTCAAGTTCTTGCGTAACAGAAGCTGTTTTGGCTGGCTCAAGTTCTTGCGTCGTCCATGTATACCAACGCCGGTTCAAGTTAAGAACGTTAATAAGTCGCCGGCGATTCTGGCTTCTACTAATAAAGATGATTGTAAAGTTGAAGAAGGTGAGGTTGCTGTACACAACCTGCACCCTCAGACATCCGAAGATGTCGTACGCTTTAACAGAAAGGTCCAAGTGGTGATAATATGTAAAAGGCGTATGAATCCTTCAAGGAAACTGGGGAAAGAAGAAGAAGAAAGAAGACGCGTATCGCTCACATTGAGATATATTGAGATGTCGTCAAAGCTTCTCCAAGTCGATCAGCTTAAGCAACTAAGGGAAGTTTTTGTTCGATTTGACATGGACTCCGACGGCAGCCTGACCGTCCTAGAGCTAGCGGCGCTCCTCCGCTCGCTTGGCCTGAAGCCCACCGGAGATCAAATCCACGCGCTGTTAGCCACCATGGATTCCAACGGCAATGGCTCGGTGGAGTTCGATGAATTGGTTAAAGCGATACTGCCAGACTTGAGGAAAGAAGAGGTAATCGTGAATCAAGAGAAGCTTCTAGAGGTTTTCAAGTGCTTCGATCGCGACGGAAATGGGTACATATCGGCGGCGGAGTTAGCGAGAGCAATGGCCAAAATGGGCCAGCCTCTCACTTACAGAGAACTCACACAGATGATCAAAGATGCCGATGAAGACGGCGACGGTGTGATTAGCTTCAGTGAGTTTGCCAATGTAATGGCCAAGTCTGCCTCTGATTTCTTAGGCCTTTCATCGCCATAA 1050 0.4905 MILQPEQQQQAGPGEAQMPAMTTPEAVPTASAWESSGSIGPFFAVISVLTALAVISCYLGRKWNPSPDSIENDNRSCFGWLKFLRNRSCFGWLKFLRRPCIPTPVQVKNVNKSPAILASTNKDDCKVEEGEVAVHNLHPQTSEDVVRFNRKVQVVIICKRRMNPSRKLGKEEEERRRVSLTLRYIEMSSKLLQVDQLKQLREVFVRFDMDSDGSLTVLELAALLRSLGLKPTGDQIHALLATMDSNGNGSVEFDELVKAILPDLRKEEVIVNQEKLLEVFKCFDRDGNGYISAAELARAMAKMGQPLTYRELTQMIKDADEDGDGVISFSEFANVMAKSASDFLGLSSP 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele17g0853 349 ProSiteProfiles EF-hand calcium-binding domain profile. 231 266 IPR002048 GO:0005509
Lele17g0853 349 Gene3D - 132 265 - -
Lele17g0853 349 SMART efh_1 311 339 IPR002048 GO:0005509
Lele17g0853 349 SMART efh_1 275 303 IPR002048 GO:0005509
Lele17g0853 349 SMART efh_1 235 263 IPR002048 GO:0005509
Lele17g0853 349 SMART efh_1 199 227 IPR002048 GO:0005509
Lele17g0853 349 CDD EFh 199 260 IPR002048 GO:0005509
Lele17g0853 349 Pfam EF-hand domain pair 198 260 IPR002048 GO:0005509
Lele17g0853 349 Pfam EF-hand domain pair 274 336 IPR002048 GO:0005509
Lele17g0853 349 FunFam Probable calcium-binding protein CML15 185 265 - -
Lele17g0853 349 ProSiteProfiles EF-hand calcium-binding domain profile. 195 230 IPR002048 GO:0005509
Lele17g0853 349 ProSitePatterns EF-hand calcium-binding domain. 284 296 IPR018247 -
Lele17g0853 349 MobiDBLite consensus disorder prediction 1 29 - -
Lele17g0853 349 ProSiteProfiles EF-hand calcium-binding domain profile. 271 306 IPR002048 GO:0005509
Lele17g0853 349 ProSitePatterns EF-hand calcium-binding domain. 320 332 IPR018247 -
Lele17g0853 349 ProSitePatterns EF-hand calcium-binding domain. 208 220 IPR018247 -
Lele17g0853 349 PANTHER CALCIUM BINDING PROTEIN 272 336 - -
Lele17g0853 349 ProSitePatterns EF-hand calcium-binding domain. 244 256 IPR018247 -
Lele17g0853 349 ProSiteProfiles EF-hand calcium-binding domain profile. 307 342 IPR002048 GO:0005509
Lele17g0853 349 MobiDBLite consensus disorder prediction 1 16 - -
Lele17g0853 349 Gene3D - 266 345 - -
Lele17g0853 349 CDD EFh 275 337 IPR002048 GO:0005509
Lele17g0853 349 SUPERFAMILY EF-hand 192 337 IPR011992 -
Lele17g0853 349 FunFam probable calcium-binding protein CML18 267 343 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele17g0853 Lele-ChrLele17 19871543 19873578 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele17g0853 195 346 EF-hand Containing Proteins AT1G18530 76.974 2.48e-83 248
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele17g0853 17 19871543 19873578 Lele19g0713 19 4137402 4139414 hybridization
Lele17g0853 17 19871543 19873578 Lele20g0744 20 14442768 14446879 hybridization