Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele17g0850 ATGGATTCGATGGACATCGTTGGGAAATCAAAGGAAGACGCTTCCCTTCCTAAAGAGTTTATAAACCTTGTTTCATCAGAGTCCAATGAAGTCTGTAATAGAGTGGATAAACGGACAATTGCTCCAGAGCATGTATTGAAGGCTCTACAGGTTCTTGGATTTAGTGAGTACATTGAGGAAGTTTATGCAGCATACGAGCAGCATAGGATTGAGACCATGGACTCTTTAAGAGCTGGCAAGTGGAGCAATGGAGCCGAGATGACTGAGGAGGAAGCATTACTGGAGCAGCAAAGGATGTTTGCAGAGGCGCGTGCTAGAATGAACGGTGGGGCCATTGCTCCAAAGCAGCCAGATGCTGACCATTGCACATCCAGCACTAGCAGATATGGAAGCAGGATGATGAAGACAGACATGGCTGCTAGAACCTCCCAAGATTTCTCCTCCAAGAGGCACTTCCACTGGACAAAAAAGGTCGGTAATGAAGAATCTGAAGCAGCTCCCACTTCAGAATCATCAATCTTAAAAATGATTGAGGAAGAGGAAAACAAGGAAGATATTGACAAGAATCCAGGATCAGCAGCAACATCACAGCAAACAGCAGCATCAAGAAGGAAGCTTCAAGCCATTGCAATCTCAAGGCTTCGATCCATTCTCACCAAGTTTGGTAAGAACCGTTCAAGCCTGGCCTTTGGCTTAGGCCCTAGAGTTGTAGGAACCCTCTTTGGTCATCGACGTGGCCATGTACATTTCGCATTCCAAAAGGAACCCAATTCACAACCAGCCTTCTTAATCGAGCTTGCCACACCAATTAGTGGTCTTGTTCGGGAAATGGCATCTGGATTAGTTCGAATCGCTCTGGAATGTGACAAAGAGAAGAAGGAAGAAGGCAAGAACAATAATAACAATAAAGCTGTGAGATTGCTTGAAGAACCAGTATGGAGGACTTACTGTAATGGAAAGAAATGTGGGTTTGCTACAAGGAGAGAATGTGGACCAAAGGAATGGGATATACTCAAAGCTGTGGAGAAAATTTCAATGGGTGCTGGAGTTTTGCCTGCTGATCAATCTGGATCCGATGGTGGTGGTTCTGGTGGTGAAGGTGAAATCATGTACATGAGAGCTAAGTTTGAGAGAATTGTGGGGTCCAGAGATTCTGAAGCTTTCTACATGATGAATCCAGATAGCAATGGATCTCCAGAGCTCAGCATATACTTGCTCAGAGTCTAG 1227 0.4491 MDSMDIVGKSKEDASLPKEFINLVSSESNEVCNRVDKRTIAPEHVLKALQVLGFSEYIEEVYAAYEQHRIETMDSLRAGKWSNGAEMTEEEALLEQQRMFAEARARMNGGAIAPKQPDADHCTSSTSRYGSRMMKTDMAARTSQDFSSKRHFHWTKKVGNEESEAAPTSESSILKMIEEEENKEDIDKNPGSAATSQQTAASRRKLQAIAISRLRSILTKFGKNRSSLAFGLGPRVVGTLFGHRRGHVHFAFQKEPNSQPAFLIELATPISGLVREMASGLVRIALECDKEKKEEGKNNNNNKAVRLLEEPVWRTYCNGKKCGFATRRECGPKEWDILKAVEKISMGAGVLPADQSGSDGGGSGGEGEIMYMRAKFERIVGSRDSEAFYMMNPDSNGSPELSIYLLRV 408
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele17g0850 408 PANTHER PROTEIN MIZU-KUSSEI 1 179 408 IPR006460 GO:0010274
Lele17g0850 408 MobiDBLite consensus disorder prediction 181 200 - -
Lele17g0850 408 SUPERFAMILY Histone-fold 18 111 IPR009072 GO:0046982
Lele17g0850 408 Gene3D Histone, subunit A 14 111 IPR009072 GO:0046982
Lele17g0850 408 TIGRFAM A_thal_3588: uncharacterized plant-specific domain TIGR01570 236 408 IPR006460 GO:0010274
Lele17g0850 408 Pfam Protein of unknown function, DUF617 236 407 IPR006460 GO:0010274
Lele17g0850 408 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 19 49 IPR003958 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele17g0850 Lele-ChrLele17 19842046 19847022 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele17g0850 1 121 CCAAT-DR1 Transcription Factor Family AT5G23090 62.987 5.34e-56 180
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Lele17g0850 DUF617 1.8e-69 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele17g0850 17 19842046 19847022 Lele19g0717 19 4159743 4164796 hybridization
Lele17g0850 17 19842046 19847022 Lele20g0741 20 14417055 14420334 hybridization