Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele17g0840 ATGTTTCCTTCCAACCCTTTTCCCTTTGACAGCAACCTTATCTCCACGCAACAAAGCCCTCCTCCTCCTTTCTCCTTTCTTCACTTCCCTCCTCCTTCCTTTGAAGACCACGAAATCTTCCTCCCTCATCATGACCACCTCTTACTTCATCATCATCAATCACAACCTCTAGCTGAAGCAGCTAGTGCCAGCATGGAGGTTTCGAACAAGAAAGAGCAGATCCCGGTAAGGAATAAGAGGATTTGCAAGAGAGATAGGCACAGCAAGATCAAGACGGCCAAAGGGCTAAGAGATCGGAGAATGAGACTTTCTCTGGAAGTAGCCAAGAGATTCTTTGGTCTTCAAGACATTCTTGGCTTTGACAAGGCCAGCAAAACCGTTGAGTGGCTGTTGAATCAGTCAAAGGACGAGATCAAACAGCTAGCAATGGACAAGAATTACAATAATTGCAGTGGGAATAATGGTGGCGCAAAGAGTGCATCTTCAACTTCAGAGTGTGAAGGGGTGTCGAGTTTGGACGAGGTGGCGTTAAGTGGAATGAATCAAGAGCAAGAGGGAGATCAACGTTCCTTACTGGTGAAGAGAAGGACAAAAAATACAAGAAAGTGTGCACTATTGGATCCTCTAATTGCAAGGGAGTCAAGGGAAAAGGCTAGAGAGAGGGCAAGAGAGAGGACCAGGCAGAAGCAGAAGATGAACATGAAAAGTCGCAAATCATTGCCAGCAGCTGATGACAACACAACCAACCATAATTGTAACCTCACCCAATTTGGTTCATGGAATACGTTTGAAACAGGAGAAAAGGTGAATAATCCCTCCTTGGAGATGATGGCTGAGGCTGCTGAAGATGAACGAAGCTCTCAGGCTAAGGATGATGAATCCTTGGCGGTTAATATGGGCAAATGGAGCCCATCCATGATATTCAACTCATTGAATACTTCATCTACATTCCTACAAGATCATCATCAATTTGCGGAATTTCAGTCATTGGCAAAACTTTGGGAGGCCTACAACAATCACATGATGATCTAA 1032 0.4467 MFPSNPFPFDSNLISTQQSPPPPFSFLHFPPPSFEDHEIFLPHHDHLLLHHHQSQPLAEAASASMEVSNKKEQIPVRNKRICKRDRHSKIKTAKGLRDRRMRLSLEVAKRFFGLQDILGFDKASKTVEWLLNQSKDEIKQLAMDKNYNNCSGNNGGAKSASSTSECEGVSSLDEVALSGMNQEQEGDQRSLLVKRRTKNTRKCALLDPLIARESREKARERARERTRQKQKMNMKSRKSLPAADDNTTNHNCNLTQFGSWNTFETGEKVNNPSLEMMAEAAEDERSSQAKDDESLAVNMGKWSPSMIFNSLNTSSTFLQDHHQFAEFQSLAKLWEAYNNHMMI 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele17g0840 343 ProSiteProfiles R domain profile. 212 229 IPR017888 -
Lele17g0840 343 Pfam TCP family transcription factor 83 232 IPR017887 -
Lele17g0840 343 MobiDBLite consensus disorder prediction 206 249 - -
Lele17g0840 343 Coils Coil 215 235 - -
Lele17g0840 343 ProSiteProfiles TCP domain profile. 83 141 IPR017887 -
Lele17g0840 343 MobiDBLite consensus disorder prediction 208 229 - -
Lele17g0840 343 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 58 342 IPR005333 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele17g0840 Lele-ChrLele17 19776228 19777514 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele17g0840 79 240 TCP Transcription Factor Family AT3G18550 45.977 4.62e-32 122
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Lele17g0840 TCP 6.2e-45 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele17g0840 17 19776228 19777514 Lele19g0727 19 4229314 4230597 hybridization
Lele17g0840 17 19776228 19777514 Lele20g0733 20 14348451 14349734 hybridization