Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele17g0838 ATGTCATCATCAAGTGGAATCATCTGGAGCTATGAAGAAGAAAAGGCGTTTGAGAATGCTATCGCAGTGCATTGGGTTGAAGAAGACTCAGAAGAACAATGGGAGAAGATTTCATCAGCTGTTCCCAGCAAAAGCATGGAGGAATTGAAGCAACATTACAAATTGTTATTAGAAGATGTAAGTGCAATAGAGGCAGGCCATACTCCACTCCCAAATTATACTGGTGGAGAAGAAGCTACTTCTTCAAGTAAGGAATTGCACGCTTCTTCTTCCAAGACTTCCGCCTCCGAAAAAAGATCTAATTGCAATTTCAGAACTGGGTTTTCTGGGTTGGGACATGACACTTCTGGGCATAATACTGGTAAAGCAGGCTCTTCAAGATCTTCAGAACAAGAAAGGCGAAAAGGAATCCCCTGGACAGAAGAAGAGCATAGGCTATTTCTACTTGGTCTTGACAAATTTGGGAAGGGAGATTGGAGGAGTATATCAAGGAACTTTGTGATGTCTAGGACTCCAACTCAAGTGGCAAGCCACGCACAGAAGTACTTTATAAGGTTGAACTCCATGAACAGAGATAGGAGAAGATCAAGCATCCATGACATAACAAGTGTGAACAATGGGGATGTGGCAAATAACCAGGCTCCAATAACAGGGCAACACACAAACACAAACCCATCAAGCACAATTGGTGTAGGACAATCTGTGAAACACAGGGCTCATCAACCCCATATACCTGCTGGTTTAGGGATGTATGGTGCACCAGTAGGGCACCCTGTGGCTGCTCCTCCAGGTCATATGGCTTCTGCTGTAGGGACCCCTGTGATGATGCCACCTGGACCCCATCCTCATCCTCATCCTCCTTATGTTGTTCCAATGGCTTACCCTATGGCATCTCCAACAATGCACAGATGA 912 0.4496 MSSSSGIIWSYEEEKAFENAIAVHWVEEDSEEQWEKISSAVPSKSMEELKQHYKLLLEDVSAIEAGHTPLPNYTGGEEATSSSKELHASSSKTSASEKRSNCNFRTGFSGLGHDTSGHNTGKAGSSRSSEQERRKGIPWTEEEHRLFLLGLDKFGKGDWRSISRNFVMSRTPTQVASHAQKYFIRLNSMNRDRRRSSIHDITSVNNGDVANNQAPITGQHTNTNPSSTIGVGQSVKHRAHQPHIPAGLGMYGAPVGHPVAAPPGHMASAVGTPVMMPPGPHPHPHPPYVVPMAYPMASPTMHR 303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele17g0838 303 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 135 185 IPR006447 GO:0003677
Lele17g0838 303 MobiDBLite consensus disorder prediction 74 126 - -
Lele17g0838 303 MobiDBLite consensus disorder prediction 68 136 - -
Lele17g0838 303 Gene3D - 137 189 - -
Lele17g0838 303 SUPERFAMILY Homeodomain-like 9 63 IPR009057 -
Lele17g0838 303 SMART sant 5 59 IPR001005 -
Lele17g0838 303 SMART sant 135 185 IPR001005 -
Lele17g0838 303 FunFam Transcription factor SRM1 1 70 - -
Lele17g0838 303 Pfam Myb-like DNA-binding domain 138 183 IPR001005 -
Lele17g0838 303 CDD SANT 138 183 IPR001005 -
Lele17g0838 303 ProSiteProfiles SANT domain profile. 139 187 IPR017884 -
Lele17g0838 303 PANTHER TRANSCRIPTION FACTOR KUA1 5 299 - -
Lele17g0838 303 FunFam transcription factor MYB1R1 137 188 - -
Lele17g0838 303 Gene3D - 2 70 - -
Lele17g0838 303 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 131 187 IPR017930 -
Lele17g0838 303 SUPERFAMILY Homeodomain-like 133 188 IPR009057 -
Lele17g0838 303 ProSiteProfiles Myb-like domain profile. 9 57 IPR001005 -
Lele17g0838 303 CDD SANT 9 57 IPR001005 -
Lele17g0838 303 ProSiteProfiles Myb-like domain profile. 131 183 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele17g0838 Lele-ChrLele17 19757291 19758413 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Lele17g0838 Myb_DNA-binding 1.4e-10 CL0123