Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele17g0826 ATGGCTTCTTCTTCTGAACTAAGCCTGGATTGCAAACCCCACAGCTACTCTTTGCTTCTAAAATCATTTGGAGATCAGGCTGATCATACCTACAAGCTTGAGGAGTTCCTTTCTCGCCTCGAGGAAGAACCTGTGGAGGCCTCAAGGCAGCAACTTCAGGCCTACAGATCAGCAAATCAAGGCACGAAGACGAGGCCAGTGCTAGAAGAATTCATACCCGTGAAGCAATCAACCTCTGAAAGCTCTGAGAAGGCATCCGACGTATCAGACAAGGCAAATTGGATGACATCTGCTCAATTATGGAGCCAAGCAAATGAAGGGACCAAGCCCCAATCCACAATCACATCACCAAAAGAAGCTGATATTGGTTTCAGTGTGAGCCCTAAGCTAGCTCTTGACAACAAACAGAGGAATGGTGGAGCCTTCCTACCATTCTCAAAAGAACGAAACTCATCATCATGTCAAAGTGGCTCCGCCACCACATTACGGGTCTTCCCAGAGTTGGCCCTCGCCTCTGTCGATGAGAAAGAGATGGAGGATAATAAGAAACGCACAGAACCAGAAAATGCAGTGTCATGTCCAAATAAGAGGGAAAATTCTGGTAAAGCCGCCGGAGGCAACAGTACAGGAGTGGTGGTCACTGAACAAGGAAAAGGAGCTCCAGTTTCATCTGATCCCCAAACCACCAACACCACTGACCAAACTCATCGGAAGGCAAGAAGATGCTGGTCACCTGACCTGCACCGCCGATTTGTAAATGCTCTTCAGATGCTAGGTGGATCTCAAGTGGCTACCCCAAAGCAGATAAGGGAGCTGATGAAGGTTGACGGTTTGACCAATGATGAAGTTAAAAGCCATCTCCAGGCATATATATATATCTCTATCTCTCTTTGTTTCTCAGGCATGGACACGCGAGACGGGCATGAAAGAAAGAGGACACTGCCCTCTTTGTACTATTATAATTGCCTTGCCTGCCTCACTGACAACGTACCACCACTCTGCAGGCTGCAGAATGCATATTCTGCATTTCCAAAACGCACTTTTTTTAGGTCTACGAATTTTCTTTTTTCCGTTACTCATCCAGTCATCCTTCTCTTTTTTGTCGTTGCACAGAAATATAGGCTTCATACACGACGTCCCAGTCCAGGCCCACAAGCAGCCGGGTCACCCGCACCTCAGCTCGTTGTCCTAGGAGGGATCTGGGTACCTCCGGAATACGCTGCCGCTCACACTGGCGCACCTGCCATCTATAGCCCACACCCCACCTACCACGCGCCGCCGCCTCCGCAGTACTGTACCGCAACGCCAGTGCATCAAGAACTCTACGCTGCCGCTGCGGCTCCGCAGCCAGCTCCGCCGCACTACCAAACGCTGCTCCATCACCATCTGCAGATGTACAAAACGAACTCGCACCAGGGCTTGCCGGAATCGGAGATGCGAGGAGGGGGAGAGAGGTCGGAGAGTATAGAGGACGGGAAGTCGGAGAGCAGCAGCTGA 1497 0.505 MASSSELSLDCKPHSYSLLLKSFGDQADHTYKLEEFLSRLEEEPVEASRQQLQAYRSANQGTKTRPVLEEFIPVKQSTSESSEKASDVSDKANWMTSAQLWSQANEGTKPQSTITSPKEADIGFSVSPKLALDNKQRNGGAFLPFSKERNSSSCQSGSATTLRVFPELALASVDEKEMEDNKKRTEPENAVSCPNKRENSGKAAGGNSTGVVVTEQGKGAPVSSDPQTTNTTDQTHRKARRCWSPDLHRRFVNALQMLGGSQVATPKQIRELMKVDGLTNDEVKSHLQAYIYISISLCFSGMDTRDGHERKRTLPSLYYYNCLACLTDNVPPLCRLQNAYSAFPKRTFFRSTNFLFSVTHPVILLFFVVAQKYRLHTRRPSPGPQAAGSPAPQLVVLGGIWVPPEYAAAHTGAPAIYSPHPTYHAPPPPQYCTATPVHQELYAAAAAPQPAPPHYQTLLHHHLQMYKTNSHQGLPESEMRGGGERSESIEDGKSESSS 498
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele17g0826 498 SUPERFAMILY Homeodomain-like 235 291 IPR009057 -
Lele17g0826 498 MobiDBLite consensus disorder prediction 54 91 - -
Lele17g0826 498 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 371 497 IPR044787 GO:0003700|GO:0006355
Lele17g0826 498 MobiDBLite consensus disorder prediction 471 498 - -
Lele17g0826 498 MobiDBLite consensus disorder prediction 175 191 - -
Lele17g0826 498 MobiDBLite consensus disorder prediction 175 239 - -
Lele17g0826 498 Gene3D - 237 292 - -
Lele17g0826 498 MobiDBLite consensus disorder prediction 74 91 - -
Lele17g0826 498 MobiDBLite consensus disorder prediction 478 498 - -
Lele17g0826 498 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 238 290 IPR006447 GO:0003677
Lele17g0826 498 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 235 295 IPR017930 -
Lele17g0826 498 MobiDBLite consensus disorder prediction 192 233 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele17g0826 Lele-ChrLele17 19665969 19668102 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele17g0826 371 442 G2-like Transcription Factor Family AT2G03500 57.143 1.69e-21 95.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Lele17g0826 None None None
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele21g1224 21 15264762 15285512 Lele17g0826 17 19665969 19668102 CCT
Lele17g0826 17 19665969 19668102 Lele17g0826 17 19665969 19668102 ECH
Lele17g0826 17 19665969 19668102 Lele19g0740 19 4348502 4350720 hybridization
Lele17g0826 17 19665969 19668102 Lele20g0720 20 14234351 14236564 hybridization