Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele17g0824 ATGAAGGACCCAGAAGAAGATCAAGTTAAATCCCGAATGAAGCCTATGCAGAAACACACGGATCGTAGAAGAAGAAGTAGGAGAAGAAGCCATTGCAAACCAGAGATATTAAAAGAAAACGGGCTTGATTTGGAACTGAAGAATCCTTATTATGCTGTCTCTTGCAATAATAATAATAACAGCCTTGAGTTCACTCATAGGCCTGGTTTTGGCCAGCTTGGGACTAAGTGTTTGGTCAAAGCTAACCACTTTCTTGCAGATATATCAGCTTCTGACTTGAGCCATTACAGTGTTAAGATAACACCAGAAGTTACTTCTCGTAAAATTAGCAAAGCTATCATTGCTGAGTTGGTGAGGCTTCATAGAAATACAGACTTGGGGATGAGGCTTCCTGTTTATGATGGAGGAAGGAATCTTTACACTGCTGGTTTGCTTCCTTTTACACACAAAGAATTCACCATAACATTGACTGAAGAAGATGAAGCTACAGTCAATACCTGGGAAAGAGAGTTTAGAGTGAAAATCAAGTTCGCAACTCGTGTTAGCATGAATCAACTACGGGAGCTTCTCAGTGGGAAACAAGCGAACAACCCACAAGAAGCACTTAACATCATTGATATTGTATTAAGGGAGCTTGCAGCTCAAAGTTACGTGTCAGTTGGAAGGTTTCTCTATTCTGCTGATATAAAAAAACCACAACAACTAGGTGGTGACATGTCATCAATGGCGTTTATTGAACCACTCCCAGTCATCGATTTTGTTGCTCAAATTCTGGGTAAAGATGTGCATTCAAAACCATTGTCAGATGCAGATCGTGTCAAGATTAAGAAAGCCTTAAGAGGTGTGAAAGTTGAAGTTACTCATAGAGGAAATGTTCGAAGGAAGTACAGGATTTCAGGACTCACATCACAGCCTACAAGAGAGCTCATATTCCCACTCGATGAGCAAATGAACATGAAATCAGTAGTTGATTACTTCCGGGAGATGTATGGTTACACAATTAAGTATTCTCATCTACCATGCCTGCAAGTAGGGAATGAAAAGAAGGTGAATTATTTGCCAATGGAGACAGTTGAACAAAATGATTATGAGAATAACCCTTATGCAAAAGAGTTTGGTATCAACATAGACGACAAGCTTGCATCGGTTGAAGCCCGGGTTCTGCCTGCTCCATGGTTGAAATATCATGATACAGGAAGAGAAAAAGAGTACTTGCCACAAGTTGGTCAGTGGAATATGATGAACAAGAAAGTTATAAATGGAAGCATAGTAAGATATTGGGCATGTATCAATTTCTCACGTAGTGTTCAACAAAGCACGGCTCTTGGTTTTTGCCAACAGTTGGTTCAGATGTGCCAAATCTCAGGCATGGAATTCAGTCAAGACCCAGTAATTCCTATATATACTGCAAGACCAGATCAGGTTAAAAAGGCCTTGAAGTACGTACACTCTTCTGCTTTGGACAAACTTGAAGGGAAAGAGCTTGAGTTGCTCATTGCCATTCTTCCAGACAATAACGGCTCTTTGTACGGTGATCTCAAAAGGATTTGTGAAACAGATCTGGGGTTGATTTCTCAGTGCTGCCTCACAAAACATGTCTTCAAGATTATTAGACAATACCTGGCAAATCTGGCACTTAAAATCAATGTCAAGATGGGAGGAAGAAACACGGTGCTTTTGGATGCGTTGAGTTGGAGTATTCCATTGGTTGTGGCCTCACAGGACTGGCCTGAAGTAACAAAGTATGCAGGACTAGTGTGTGCTCAGCCTCATCGCGAAGAACTTATTCAAGACCTTTTCAAGTGTTGGAAAGATCCTCAGCGCGGCGTAGTTTATGGTGGCATGATCAGGGATGGGGTAAGTGAAGGACAATTCTACCAGGTTTTGTTGTATGAGCTCGATGCTATCCGCAAGGCTTGTGCATCACTGGAAACTAGTTACCAACCTCCAGTAACATTTGTGGTGGTTCAAAAGAGGCATCACACAAGACTCTTCTCAAGCAATCATGATGACAGAAATAGCACTGACAGGAGTGGCAACATCTTACCTGGTACGGTGGTGGATTCTAAGATCTGTCATCCTACAGAATTTGACTTTTATTTATGCAGTCATGCAGGAATACAGGGCACGAGTAGACCAGCTCACTATCATGTCCTGTGGGACGAGAACAAATTCACTGCAGACGAGATTCAATCTTTAACCAACAACTTATGCTACACGTATGCAAGATGCACAAGATCTGTTTCCGTAGTTCCTCCTGCATACTATGCTCATCTAGCAGCCTACAGAGCTCGATTCTACATGGAACCTGATGTGCATGAGAATAATGCAGCTAATAAAGCACGTGGGGGAAGATCTAGGGATGGTTCAGTTCGGCCGCTGCCGGCTCTGAAGGACAAGGTCAAGAAAGTCATGTTTTACTGTTGA 2427 0.4203 MKDPEEDQVKSRMKPMQKHTDRRRRSRRRSHCKPEILKENGLDLELKNPYYAVSCNNNNNSLEFTHRPGFGQLGTKCLVKANHFLADISASDLSHYSVKITPEVTSRKISKAIIAELVRLHRNTDLGMRLPVYDGGRNLYTAGLLPFTHKEFTITLTEEDEATVNTWEREFRVKIKFATRVSMNQLRELLSGKQANNPQEALNIIDIVLRELAAQSYVSVGRFLYSADIKKPQQLGGDMSSMAFIEPLPVIDFVAQILGKDVHSKPLSDADRVKIKKALRGVKVEVTHRGNVRRKYRISGLTSQPTRELIFPLDEQMNMKSVVDYFREMYGYTIKYSHLPCLQVGNEKKVNYLPMETVEQNDYENNPYAKEFGINIDDKLASVEARVLPAPWLKYHDTGREKEYLPQVGQWNMMNKKVINGSIVRYWACINFSRSVQQSTALGFCQQLVQMCQISGMEFSQDPVIPIYTARPDQVKKALKYVHSSALDKLEGKELELLIAILPDNNGSLYGDLKRICETDLGLISQCCLTKHVFKIIRQYLANLALKINVKMGGRNTVLLDALSWSIPLVVASQDWPEVTKYAGLVCAQPHREELIQDLFKCWKDPQRGVVYGGMIRDGVSEGQFYQVLLYELDAIRKACASLETSYQPPVTFVVVQKRHHTRLFSSNHDDRNSTDRSGNILPGTVVDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENKFTADEIQSLTNNLCYTYARCTRSVSVVPPAYYAHLAAYRARFYMEPDVHENNAANKARGGRSRDGSVRPLPALKDKVKKVMFYC 808
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele17g0824 808 SUPERFAMILY PAZ domain 243 358 IPR036085 GO:0005515
Lele17g0824 808 SUPERFAMILY Ribonuclease H-like 485 770 IPR012337 -
Lele17g0824 808 SMART PAZ_2_a_3 252 390 IPR003100 GO:0005515
Lele17g0824 808 MobiDBLite consensus disorder prediction 1 30 - -
Lele17g0824 808 Gene3D paz domain 242 361 - -
Lele17g0824 808 MobiDBLite consensus disorder prediction 16 30 - -
Lele17g0824 808 SMART Piwi_a_2 497 769 IPR003165 GO:0003676
Lele17g0824 808 FunFam Argonaute 10 387 560 - -
Lele17g0824 808 CDD PAZ_argonaute_like 247 356 - -
Lele17g0824 808 Pfam Mid domain of argonaute 406 483 IPR032473 -
Lele17g0824 808 ProSiteProfiles Piwi domain profile. 497 769 IPR003165 GO:0003676
Lele17g0824 808 MobiDBLite consensus disorder prediction 1 15 - -
Lele17g0824 808 Gene3D - 560 808 IPR036397 GO:0003676
Lele17g0824 808 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 61 770 - -
Lele17g0824 808 Pfam N-terminal domain of argonaute 76 209 IPR032474 -
Lele17g0824 808 Pfam Argonaute linker 2 domain 357 395 IPR032472 -
Lele17g0824 808 CDD Piwi_ago-like 367 768 IPR045246 -
Lele17g0824 808 FunFam Protein argonaute-2 241 362 - -
Lele17g0824 808 Gene3D - 387 559 - -
Lele17g0824 808 Pfam PAZ domain 252 359 IPR003100 GO:0005515
Lele17g0824 808 Pfam Piwi domain 498 561 IPR003165 GO:0003676
Lele17g0824 808 Pfam Piwi domain 570 768 IPR003165 GO:0003676
Lele17g0824 808 ProSiteProfiles PAZ domain profile. 248 362 IPR003100 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele17g0824 Lele-ChrLele17 19642480 19648338 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele17g0824 64 808 Eukaryotic Initiation Factors Gene Family AT5G43810 63.647 0.0 1135
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele17g0824 17 19642480 19648338 Lele19g0742 19 4367773 4375862 hybridization
Lele17g0824 17 19642480 19648338 Lele20g0718 20 14212440 14226804 hybridization