Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele17g0801 ATGGAGTGCGAGGATTATGATCCACGTACTGAATCCGAAGCATTACAGGCTCTTCTACCATGGGATCCGTTCTCGGAAGCGTTGTGTGAATTCAGTATATTTTGTCATCATTTATTTGATTATATCAATTTGACATCTGAGAATTTTGCTATGAGTTTTCCTGATCATCACCCTGGCTTCATGCTATCGCCGTTACCATTTGAGGCGGATGACGATTCCAATGGAAGGTGGCCGGAATTCCCAATGAACAACGAACTTTTCGACTCACATTCAACATTTGATCAGCTTCCTTCGTTCAAAAGGCCCAGAACATCCGAAAGCAATCACTTCGATCCCTCGCCATTCCCGCCGCTGCCCATGAATTCCAGGATGCCCCACCCACAAAATCCTCCGACAAACAGAGGAGGAACAAGCCACATTTTTTATAAGACCCGCCTGTGTGCGAAATTTAGAATGGGTACATGTAGGAACGGCGAGAATTGCAATTTTGCTCACGGCAATGAGGACGTGAGGCTGCCACCACCAAATTGGCAGGAACTTATTGGCTTACGCGATGAAGAACGACCATCTGCAAATTGGGACGACGACCAGAAAATCATACATAAGATGAAGCTTTGCAAGAAGTATTACAATGGTGAGGAATGCCCTTATGGTGAAAATTGCAATTTTCTTCATGAAGACCCGTCCAAGTTCAGGGATGATGCAGGAAGGTGCAGGGAGAGCTCAGCTATAAGCCTTGTGGCTAATGGATCTCCAAAGTCGCACGTGAATGGCCCTAATCATTCAGACAATAATAAGACTGTCAACACGGGGTGTGATGGTTTTAGAACAAATGGGAAAGCTCCTTTCTGGAAGACTAAGTTGTGTAGCAAGTGGGAGACAACAGCACAGTGCCCTTTCGGGGATAAATGTCATTTTGCCCATGGACAAGCAGAGTTACAAGTGCCTGGTGGACGCAGTGAAGCAGAAGCTATAGGAACTCCATCAATTCCTGTGAATGATGTGTCTGCCATCAACGCTGCAAGTATACTTGATTCAAAGGAAGAGGAGCAGAAAAAGAAGAATTTACTCAAGTGGAAAATAAACAAGAAGGTCAATCGAATTTATGCTGATTGGCTTGATGACCTTCCATTGGCAAGCGACCACTGGCTCTTTCTGTTACCTTCCATTCTTCTTCCTTCAATACAGAACTCTATTACTGAATGTAAGAAGATGATAAAGCTTCTTCCCTTTCCTTCATCCTCTACCATCTCTTCCATAATTCCTGCTTCACTTCGTTCCTTTCCTCTATCCAGAGCTTTCTCCCCGCTCAAGGCTTCCCTTACCACTATGTCCATCAACTTGCACCCTCGTGCCTACGCTGAAAATACACCATTATCCAGATCCTCCAAACCTACTGACCTCTTTTCACCCACCGGAGCTCTTGAATCCCTGAAATTTCAACTTTCAGAGTCCACTCAACCTTCATCCACCACCCCACGTTTCGAGGTACTGCCTTTCAGAAACGGGAGACCCTTAGCATCTTCTTCGACAGCTCACTCCCTAGATTCCCTGCAGATTTGGCATCTGGGTTGGATCAATTTGGGTGATCTCAAGGTGCTTTTGGAAACTTCTGGGGGACAATTGAGCGGAGACTCGTTGGTGTACGTGGGCTCGTGTTTAGAAGACGACGTCGTTTACTGGGCAATTGACGTTTCTTCTGAGCAGGGCTTGTTGGCTGAATTAGGAAGCAAGAAGAACTTCTGTTTCGTGGAGCTGAGATCACTCATGGTTGCTTCCGATTGGTCGGACTTGCAAGTGACGGGAAACTTGGCTATTGCTGGTCATGCCAGGGCACTGCTGGAATGGCATAATACATCGCAATTTTGTGGACATTGTGGAGAGAAAACAGTCACTATAGAAGCTGGTAGGCGAAAGCAATGTTCGAACGAATCATGCAGAAAGAGAATATATCCACGAGTTGACCCGGTGGTCATTATGTTAGTCATTGACCGAGAGAATGACTGCATCCTTTTGGGTCGAAAATCAAGTTTTGTACCAAGAATGTGGAGCTGCTTAGCAGGTTTCATAGAGCCTGGAGAAAGTCTGGAGGAGGCCGTGAGAAGAGAAACATGGGAAGAGACAGGTGTTGAAGTGGGAGAGGTTGTATATCACAGTTCTCAGCCATGGCCTGTTGGACCAAGTAGCATGCCATGCCAGCTGATGGTTGGGTTCTTTGCATATGCAAAATCCCTTGACATAAATGTGGACAAGAAAGAGTTAGAAGATGCTCAGTGGTACAGTAGAGAAGCTGTGAGAAAAGCATTGACAGTGGCAGAGTACAAGAAAGCCCAAAGAACTGCAGCATACAAGGTAGAACAAATGTGCAACGGGGTGGAAAAAAGACACAGCTTAACTGCAGATTTTAATGTAGAAAGTGGTGAACTTGCTTCCATGTTTGTCCCAGGACCCCATGCAATAGCTCATCGTCTGATTTCCTCTTGGGCCTTTCAAGATATACCTTATGGTGTTCCTTGCCGTTGA 2523 0.4566 MECEDYDPRTESEALQALLPWDPFSEALCEFSIFCHHLFDYINLTSENFAMSFPDHHPGFMLSPLPFEADDDSNGRWPEFPMNNELFDSHSTFDQLPSFKRPRTSESNHFDPSPFPPLPMNSRMPHPQNPPTNRGGTSHIFYKTRLCAKFRMGTCRNGENCNFAHGNEDVRLPPPNWQELIGLRDEERPSANWDDDQKIIHKMKLCKKYYNGEECPYGENCNFLHEDPSKFRDDAGRCRESSAISLVANGSPKSHVNGPNHSDNNKTVNTGCDGFRTNGKAPFWKTKLCSKWETTAQCPFGDKCHFAHGQAELQVPGGRSEAEAIGTPSIPVNDVSAINAASILDSKEEEQKKKNLLKWKINKKVNRIYADWLDDLPLASDHWLFLLPSILLPSIQNSITECKKMIKLLPFPSSSTISSIIPASLRSFPLSRAFSPLKASLTTMSINLHPRAYAENTPLSRSSKPTDLFSPTGALESLKFQLSESTQPSSTTPRFEVLPFRNGRPLASSSTAHSLDSLQIWHLGWINLGDLKVLLETSGGQLSGDSLVYVGSCLEDDVVYWAIDVSSEQGLLAELGSKKNFCFVELRSLMVASDWSDLQVTGNLAIAGHARALLEWHNTSQFCGHCGEKTVTIEAGRRKQCSNESCRKRIYPRVDPVVIMLVIDRENDCILLGRKSSFVPRMWSCLAGFIEPGESLEEAVRRETWEETGVEVGEVVYHSSQPWPVGPSSMPCQLMVGFFAYAKSLDINVDKKELEDAQWYSREAVRKALTVAEYKKAQRTAAYKVEQMCNGVEKRHSLTADFNVESGELASMFVPGPHAIAHRLISSWAFQDIPYGVPCR 840
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele17g0801 840 CDD NADH_pyrophosphatase 656 831 - -
Lele17g0801 840 Pfam NADH pyrophosphatase-like rudimentary NUDIX domain 497 616 IPR015375 GO:0016787
Lele17g0801 840 ProSiteProfiles Nudix hydrolase domain profile. 652 782 IPR000086 -
Lele17g0801 840 MobiDBLite consensus disorder prediction 97 111 - -
Lele17g0801 840 Pfam CCCH-type zinc finger 204 225 IPR041367 -
Lele17g0801 840 ProSiteProfiles Zinc finger C3H1-type profile. 283 311 IPR000571 GO:0046872
Lele17g0801 840 ProSitePatterns Nudix box signature. 688 709 IPR020084 GO:0016787
Lele17g0801 840 FunFam Zinc finger CCCH domain-containing protein 136 172 - -
Lele17g0801 840 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 284 310 IPR000571 GO:0046872
Lele17g0801 840 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 142 166 IPR000571 GO:0046872
Lele17g0801 840 ProSiteProfiles Zinc finger C3H1-type profile. 141 168 IPR000571 GO:0046872
Lele17g0801 840 SUPERFAMILY CCCH zinc finger 200 227 IPR036855 GO:0046872
Lele17g0801 840 Gene3D Nucleoside Triphosphate Pyrophosphohydrolase 653 830 - -
Lele17g0801 840 SUPERFAMILY CCCH zinc finger 139 172 IPR036855 GO:0046872
Lele17g0801 840 SUPERFAMILY Nudix 605 779 IPR015797 -
Lele17g0801 840 FunFam Zinc finger CCCH domain-containing protein 278 315 - -
Lele17g0801 840 PANTHER NUDIX HYDROLASE, NUDC SUBFAMILY 466 830 - -
Lele17g0801 840 Gene3D - 277 315 - -
Lele17g0801 840 Gene3D - 136 172 - -
Lele17g0801 840 Gene3D - 198 229 - -
Lele17g0801 840 SUPERFAMILY CCCH zinc finger 282 314 IPR036855 GO:0046872
Lele17g0801 840 Gene3D - 516 652 - -
Lele17g0801 840 ProSiteProfiles Zinc finger C3H1-type profile. 200 228 IPR000571 GO:0046872
Lele17g0801 840 PRINTS NUDIX hydrolase family signature 683 697 IPR020476 -
Lele17g0801 840 PRINTS NUDIX hydrolase family signature 697 712 IPR020476 -
Lele17g0801 840 MobiDBLite consensus disorder prediction 112 126 - -
Lele17g0801 840 MobiDBLite consensus disorder prediction 97 137 - -
Lele17g0801 840 SMART c3hfinal6 283 310 IPR000571 GO:0046872
Lele17g0801 840 SMART c3hfinal6 141 167 IPR000571 GO:0046872
Lele17g0801 840 SMART c3hfinal6 200 227 IPR000571 GO:0046872
Lele17g0801 840 FunFam Nudix hydrolase 19, chloroplastic 653 832 - -
Lele17g0801 840 Pfam NUDIX domain 656 772 IPR000086 -
Lele17g0801 840 FunFam Zinc finger CCCH domain-containing protein 39 197 229 - -
Lele17g0801 840 Pfam NADH pyrophosphatase zinc ribbon domain 619 651 IPR015376 GO:0016787|GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele17g0801 Lele-ChrLele17 19512466 19520636 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele17g0801 283 314 C3H Transcription Factor Family AT1G68200 56.250 9.72e-07 49.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Lele17g0801 NUDIX 1e-16 CL0261