Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele17g0731 ATGGGTAACAAAAAGAAACAAGTTGGAGAAAAATCAAGTGATAAGGATACTGAGGTGTTCATTTCAATATCTCAAGAGTTAAAGAGTGAAGGGAACAAGCTGTTTCAAAAGAGAGATCCTGAAAGAGCCATCTTAATGTATGAGAAAGCCATTAAATTGCTACCAACAAATCATATAGATGTGTCTTGTCTGAGGAGTAACATTGCTGCGTGCTACATGCAGCTGGGACTCGTCCTGTACCCAAGGGCGATTAATGAATGTAACTTAGCTCTTGAAGTTACTCCAAACTACAGTAAAGCCCTTTTGAAGAGGGCAAGGTGCTATGGGGCTTTAAATAGGCTGGATTTAGCCCTGAGCGATGTTACTACGGTACTGAAGAAGGAGCCAAATAATACTATGGCATTGGAAATTTTGGAGCAGGTGAAAAATGCACTCGAGGAGATGGGATTAAAAGTATCTGACATAGAAATTGAGTTGCCTTCTGATCATGCTGAATCTCCTTGTGTGCCTCCAAAAGTAGTAAAAGACAAGAAACACAAGAAAAACAAAAAGGCTGAGTTGGTGACTGCAGATAATGTCGGTGTGGAAAATCCCGCTGAGGAGAAGTTGGAAGACAAAAAGGTTGAGGACAGCGTTGAGCAGAAGAAGGCTATGAAAAAATCTGAAGACAAGAAGGTTGAGGACAGTGATGAGAAGAGGAAGGCTGTGAAAAAATCTGAAGAGAAGTTGGAAGACAAGAAGGCGGAGGACAGTGCTGAGCAGAAGAAGGCTGTGACCAAGTCCAAAAAGAAGGCGGCAAAGGAAAAGATTAATGAGAAGAAGGCTGATGTAAAGGATGTTATCAGTGATGCAGCTAAGAAAACAGTGAAACTTGTTTTTGGTGAGGACATTAGATTTGCAGAATTACAAGTTAATTGCAGCCTGCAGCATCTAAGGGAAGTTATCAGCGACCGATTTCCAAATGTAGGAGCAGTTCTTGTCAAATGTAGGGATCAAGAAGGTGATTTGGTCACAATCACTTCCGATGAAGAATTAAGATGGGCTGAAACATCAGCAGGATCAGAGAGTTCTATCCGCCTTTATATAGTGGATGCTGATCCTGATCAGGATCCATTTTTTGAGAAAATTAATGAAAAGAAGGAGCAAAAAGAGCCTGTCATTAATAATGCACTTGAGAATGATTGTGTGGTTAAAGAAAATGAAATGATTAAGTCATCATCTTGTATTGAGGATTGGATAATCCAGTTTGCCCAACTGTTCAAGAACTATGTTGGCATTGAATCTGACAGGTATTTAGACTTTCATGAACTTGGAATGAAACTCTATTCTGAGGCTATGGAGGAGACAGTTACTAATGAAGAAGCACAAAGCCTGTTTGACATGGCAGGAGCTAAGTTCCAAGAGATGGCGTCTTTAGCGTTGTTCAACTGGGGAAATGTTCACATGTCCAGGGCAAGGAAGAAGGTGAACTTCACAGAAGAATCTTCTAAAGAGAATCTGCATGAACAGATAAAAAATTCATACGAATGGATGCAACAAGAATACAAAAGGGCGGGAGAAAAATATGAAGCAGCCATTAAAATGAAACCCCATTTTTATGAAGGCTTCCTGGCACTAGGGCAACAGCTGTTTGAGCAAGCAAAACTTTCTTGGTATTATGCAATTAAAACAAATGTTGACTTAGCAACATGGCCCTCTGCCGAAGTTCTTCAACTTTACAACAATGCCGAGGAAAACATGGAGAAAGGAATGCAGATATGGGAAGAATCAGAAAAGCAATGCTTGAATGAAGATTCAGATTCTAAATCAAAGGATATCAAATTCCATTTACAGAATATGGGATCGGATTGCCTATTGCAGAATAAATCATCAGAAGAAGAAATAGCAGCTCAGGCAGCAACCTTGAAGTCTCAAATAAATATCTTTTGGGGTACAATGCTATATGAGCGTTCAATTATGGAATTCAAATTAGGGTTACCACTATGGGATGAATGTCTGGAAGTTGCAGTTGAGAAGTTTGAACTTGCTGGAGCTTCTCCAACAGATATAGCTGTAATGTTGAAGAACCACTGCTCAAATGAAACTGCTGCTGAAGGTCTAGGATTCAACATTGATGAAATAGTACAAGCATGGAATGAGATGCTTGAAGCTAGAAGGTGGCAGAATCAAGTTTCGTCGTATCATTTGGAACCCTTATTCAGAAGGCGAGCTTCAAAAATTTATCATGCCTTGGAACTTGCATGA 2244 0.3988 MGNKKKQVGEKSSDKDTEVFISISQELKSEGNKLFQKRDPERAILMYEKAIKLLPTNHIDVSCLRSNIAACYMQLGLVLYPRAINECNLALEVTPNYSKALLKRARCYGALNRLDLALSDVTTVLKKEPNNTMALEILEQVKNALEEMGLKVSDIEIELPSDHAESPCVPPKVVKDKKHKKNKKAELVTADNVGVENPAEEKLEDKKVEDSVEQKKAMKKSEDKKVEDSDEKRKAVKKSEEKLEDKKAEDSAEQKKAVTKSKKKAAKEKINEKKADVKDVISDAAKKTVKLVFGEDIRFAELQVNCSLQHLREVISDRFPNVGAVLVKCRDQEGDLVTITSDEELRWAETSAGSESSIRLYIVDADPDQDPFFEKINEKKEQKEPVINNALENDCVVKENEMIKSSSCIEDWIIQFAQLFKNYVGIESDRYLDFHELGMKLYSEAMEETVTNEEAQSLFDMAGAKFQEMASLALFNWGNVHMSRARKKVNFTEESSKENLHEQIKNSYEWMQQEYKRAGEKYEAAIKMKPHFYEGFLALGQQLFEQAKLSWYYAIKTNVDLATWPSAEVLQLYNNAEENMEKGMQIWEESEKQCLNEDSDSKSKDIKFHLQNMGSDCLLQNKSSEEEIAAQAATLKSQINIFWGTMLYERSIMEFKLGLPLWDECLEVAVEKFELAGASPTDIAVMLKNHCSNETAAEGLGFNIDEIVQAWNEMLEARRWQNQVSSYHLEPLFRRRASKIYHALELA 747
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele17g0731 747 MobiDBLite consensus disorder prediction 197 255 - -
Lele17g0731 747 Gene3D - 275 364 - -
Lele17g0731 747 MobiDBLite consensus disorder prediction 162 255 - -
Lele17g0731 747 SUPERFAMILY TPR-like 21 147 IPR011990 GO:0005515
Lele17g0731 747 SUPERFAMILY CAD & PB1 domains 287 376 - -
Lele17g0731 747 Gene3D Tetratricopeptide repeat domain 15 156 IPR011990 GO:0005515
Lele17g0731 747 ProSiteProfiles PB1 domain profile. 286 365 IPR000270 GO:0005515
Lele17g0731 747 Coils Coil 138 158 - -
Lele17g0731 747 SMART PB1_new 286 365 IPR000270 GO:0005515
Lele17g0731 747 CDD PB1 288 362 - -
Lele17g0731 747 PANTHER PROTEIN CLMP1 5 745 IPR044517 -
Lele17g0731 747 Coils Coil 226 249 - -
Lele17g0731 747 ProSiteProfiles TPR repeat profile. 24 57 IPR019734 GO:0005515
Lele17g0731 747 Coils Coil 256 283 - -
Lele17g0731 747 Pfam PB1 domain 288 364 IPR000270 GO:0005515
Lele17g0731 747 SMART tpr_5 24 57 IPR019734 GO:0005515
Lele17g0731 747 SMART tpr_5 98 131 IPR019734 GO:0005515
Lele17g0731 747 SMART tpr_5 62 97 IPR019734 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele17g0731 Lele-ChrLele17 18999667 19001977 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele17g0731 12 131 Calmodulin-binding Proteins AT3G25230 34.848 2.10e-07 52.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele17g0731 17 18999667 19001977 Lele17g0731 17 18999667 19001977 ECH
Lele17g0731 17 18999667 19001977 Lele19g0827 19 4991380 4994961 hybridization
Lele17g0731 17 18999667 19001977 Lele20g0630 20 13549454 13551785 hybridization