Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele17g0719 ATGGCAAGTAATGGTCCTGAAAAGATCCCTATCTATAATGATACTGAAGGTTCAGAAACTTCCATTGAGATAAAGATTAAAACATTGGACTCACAAATTTATACTCTCAAAGTGGATAAACAGATGCCAGTTCCTGCTTTGAAGGAACAGATTGCTTCTGTAACTGGAGTGTTGTCAGAGCGGCAGCGCTTAATTTGTCGAGGAAAAGTTCTAAAGGATGATCAACTCCTTTCTGCATACCATGTTGAAGATGGTCATACCTTGCATCTGGTTGTGAGGCAACCTGATCTACCCGGAAGTTTGCCAAATCAATCAGCAACTGACCCACATTCAAGCACAAACAATAGTCACAGTAATCAAATAGCTCCTGGCGTTTTTATTGAAACTTTTAATGTGCCCGTTCAGGGAGATGGAGTTCCTCCAGAAGTTAATAGGATCATTTCTGCTATTCTAGGATCTATTGGAATTTCAAATTTTCCAAGTGGCAGTGAAGGGATTGATGTTAGGGGGCATGATTCCCGAGGGCTTGGGAGAACATCAGGTTCTAGTGGTTTATCTGATTCATTTCATCCTCAACCTGAACAAGCTGGTTTGCGGAGCTCATCTGATAGATCACGTAATATATTTGGACTTCCAACTGCAGCTTCATCTTTGGGATCATTACAGGCTCCTGTCATTCCCGATTCTTTGACAACTTTGTCTCTGTACGTGAGTCATCTAAGGCATGAATTTGAAGCCATTGTGAGAGAAGGGGGAAATAGTACCCAAGCAGCTGAGGCTCATAGGAATGAAGCATCAATTTCTTCTTCACCTTCAGGTTCTACCCCAGAAGGGCTTTTGTCACCTGCGTACTTGGCAGAAGTCTTGCATTCTACCAGACGGATGTTCATTGAACAGGCTAATGAGTGCTTATTTCAACTTGCAACACAGCTCGAGAATCAAGCAAATGTAACTGATCCCTTGTTGAGGTCAAACACTCAGTCTAGGGCTTGGAGGACTGGAGTTCTGTTTTACAATCTTGGTGCACTTTTACTGGAGCTTGGTCGCACAACCATGGCATTACGCTTGGGTCAAACACCGTCTGAAGCTGTAGCTAATGGCGGACCAGCAGTTTTTATATCCTCATCTGGTCCTAACCATATCATGGTTCAGCCTCTCCCTTTTCAACCTGGAGCAGGCTTTGGCTCTACCCCTGTGGGAGCTGTGCAGTCCCCCTCTGGTTTAGGTAGTGGACTTGGTTCAAGTTTTTACCCAAGGCGTATAGATATTCAGATACGGCGAGGTACATCAACATCTTCAGCTAATGCCAACAGAGAAGAACATGGGGATACACAATCTGCCTCAGTACAAAGAAATCCTGTTGAAATTTCTGTCAATCAAACAAGCTCGAGACTACCAGAAGATTTATCTTTTGGTGGGGAGTCAGGAGTACGGATGGTGCCAATTAGAACCATGGTTGCAGCAGTACCTAGCCAGTTAGGTCGCAACCCTTCAGAATCTTCTGCTAATTCTGTAGGGCTTTACTATCCTGTTATTGGGAGATTTCAGCATGCACCTTCTGGCAATGGGAATAGTGAATCAGGATCTCAACCTGCCAGTCAGCATCATGCTTCTGGTTTTCATGCAGTGCAACAGCCAACACCTGAATCTACTGGGCAAAGGCAAAGCACGGATGATCCTGCAAGAAATGGACCTTCATCGACTCCTAGCTTAAGACAAGAGCCATCTAATACCCGCAGGGTGAACATCAATATTCTGACGGCTGGTGGGCTCCAGAACAACCAAGAATCTGAGAGGCAGATACCCAATAATGTACTTCAGTTTATAAGAGCACTTTTTCCTGGTGGTGAAATTAATGTTGAAGATTCTAATTCACAAGGAACGACTGGTGATCCTACCTCAGATAATGCTGGAACATCAACAGGTGCTGTTCTTGCCCCCGAGTCAGGGCCCCGAGCTAGTGAGGAAGGAATATTTTTGTCCAATCTACTCCGCGAGGTCATGCCTCTCATATCACAAGCAGGGTCTGGGACGCATGGAACTCCTCAAAGTGAAAATGCTGCAGACGATCAAACAGCTTCTGATTCTTCCATCCAGGGTGGGATATCGCGCAGACAAAGTGATTCTGATCCAAGCCCTCCAAATCCTAAACGCCAAAAGATGGAGTGA 2169 0.4486 MASNGPEKIPIYNDTEGSETSIEIKIKTLDSQIYTLKVDKQMPVPALKEQIASVTGVLSERQRLICRGKVLKDDQLLSAYHVEDGHTLHLVVRQPDLPGSLPNQSATDPHSSTNNSHSNQIAPGVFIETFNVPVQGDGVPPEVNRIISAILGSIGISNFPSGSEGIDVRGHDSRGLGRTSGSSGLSDSFHPQPEQAGLRSSSDRSRNIFGLPTAASSLGSLQAPVIPDSLTTLSLYVSHLRHEFEAIVREGGNSTQAAEAHRNEASISSSPSGSTPEGLLSPAYLAEVLHSTRRMFIEQANECLFQLATQLENQANVTDPLLRSNTQSRAWRTGVLFYNLGALLLELGRTTMALRLGQTPSEAVANGGPAVFISSSGPNHIMVQPLPFQPGAGFGSTPVGAVQSPSGLGSGLGSSFYPRRIDIQIRRGTSTSSANANREEHGDTQSASVQRNPVEISVNQTSSRLPEDLSFGGESGVRMVPIRTMVAAVPSQLGRNPSESSANSVGLYYPVIGRFQHAPSGNGNSESGSQPASQHHASGFHAVQQPTPESTGQRQSTDDPARNGPSSTPSLRQEPSNTRRVNINILTAGGLQNNQESERQIPNNVLQFIRALFPGGEINVEDSNSQGTTGDPTSDNAGTSTGAVLAPESGPRASEEGIFLSNLLREVMPLISQAGSGTHGTPQSENAADDQTASDSSIQGGISRRQSDSDPSPPNPKRQKME 722
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele17g0719 722 MobiDBLite consensus disorder prediction 517 579 - -
Lele17g0719 722 MobiDBLite consensus disorder prediction 674 714 - -
Lele17g0719 722 MobiDBLite consensus disorder prediction 673 722 - -
Lele17g0719 722 MobiDBLite consensus disorder prediction 98 120 - -
Lele17g0719 722 MobiDBLite consensus disorder prediction 95 120 - -
Lele17g0719 722 MobiDBLite consensus disorder prediction 429 452 - -
Lele17g0719 722 ProSiteProfiles Ubiquitin domain profile. 22 97 IPR000626 GO:0005515
Lele17g0719 722 MobiDBLite consensus disorder prediction 619 643 - -
Lele17g0719 722 MobiDBLite consensus disorder prediction 252 276 - -
Lele17g0719 722 Pfam Ubiquitin family 24 94 IPR000626 GO:0005515
Lele17g0719 722 SMART ubq_7 22 93 IPR000626 GO:0005515
Lele17g0719 722 MobiDBLite consensus disorder prediction 617 653 - -
Lele17g0719 722 MobiDBLite consensus disorder prediction 165 205 - -
Lele17g0719 722 PANTHER LARGE PROLINE-RICH PROTEIN BAG6 15 717 - -
Lele17g0719 722 MobiDBLite consensus disorder prediction 176 205 - -
Lele17g0719 722 CDD Ubl_ubiquitin_like 24 91 - -
Lele17g0719 722 MobiDBLite consensus disorder prediction 518 579 - -
Lele17g0719 722 SUPERFAMILY Ubiquitin-like 17 100 IPR029071 -
Lele17g0719 722 MobiDBLite consensus disorder prediction 256 276 - -
Lele17g0719 722 FunFam Large proline-rich protein BAG6 14 107 - -
Lele17g0719 722 Gene3D - 15 120 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele17g0719 Lele-ChrLele17 18908869 18914710 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele17g0719 22 93 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 36.111 3.04e-08 51.2