Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele17g0714 ATGGGTTCCACCAGTAGTAGACTTCGGTCTCGCCCTTCCACCCCCCGTGTCAATGGCACTAACCGCTTCAGATTCTCCTCCCTTCTCTGCGGTGGCTCCGCCTTCCGTTCCACTTACGAGATGGAAGATCAACCAACTGAACTTCAGAGAGATTCTGCAACAGAATTTAATGATGAAAATCAGAAAGTTGTTGAGGAGTCATCTATATCATGTACAGAAGCTAGAATTGGTTGCAGCCCCCGTACTGAAACTGTAAGCTCATCGGATACTAGAACTGAGTTGAGCGAGATTTCTACTGTTGAAGGTTCCTCAAGAAGTGTTTCAACTAGTTATCAAACGAAGTACTTGTCTGAAAGTAAGGAGTTAGTTCCTCCTCATCAGGTAAGTGCTGATCATAGTTATGATGAATCTTATAGGGATAGTAGCAACACAGCTAGTACTTCTTTTGTAGAACAGCAGTCTTCAGATCCAGTCTCTGTAAATATTTCTGCTAACAAAGATGCTGTCAACAATATTGATGGTTCAGTGGATAGTGGTGTTTCTCAAATATCTCGGGAGATAATGTATCCAAGGAGGTCAACCTCTCACGAGCAAGGAGATTCCTCTGCCAATAGCATTTCTATTGAGAATCACACACATTCAGCTGTAGCTATCCATAATTCTGAATTGGTTCATGTTGCTCAAGTTTCCAATTTACCTGTAACTTCAGAGTTGCCTGAAAATGAAACCCGTCAGGACACAATACCTTCAGGTTTAGGTTTTCTTGTGTCCAATAGGGAAAGAGGACAGGGAAATGACAGTATGTTTCTAGTTGATGTTGTTGCAATATCTTCCAATGTTTTGCCTGACGGCAATGCTGATGTTAGTCATCGTGATGCTAGAAGGGATAGTAGAAGACTATCTTGGGATGCTTTTTCAAGACGTAGTTCCAGAAGATTTGGTGATTCTCGAACTTTTGTCTTCTCAGCTGGTGACGTTGATGATCCAAGTTCTCAAGATCAATGGCTTCTTGATTTGAGTAATAATTCCTCAAATGATAGGGTGGGAGATGATTCTGGATATTTGGGCAGTAGGATTCATAGATTGAATGAGCGGATGAGGCACTCAAGATCTGAGATCTGGGAAAGACTTCGTGGTGGCCTTGATGAGGTTGGTCGGTTGAATCCTTCTTGTCCATTAGGACTTCACCCTGATGGCATGTGTTCATGCGAGTCTTTCCAGATGGCTGAGGAGTCTAGTACTCGTGCAAGTATATCAAGAATAGCAATGCTTGCTGAAGCTCTATTTGAGGTTTTGGATGAAATCCATCGCCAACCTGTATCACTTGCCCTCTCCATGGTCTCTCTTCCAGCACCAGAATCAATTGTAGACTCTTTCCCTCTTAAGTGCCACAAAAAGATTGACACAGCTGATAATGGCAATGATGCGGAACAATGTTACATATGCCTGGCTGAGTACGAGGAAGGAGACAAAATACGCGTTCTTCCATGCAACCATGAGTACCACATGTCATGTGTTGATAAGTGGCTTAAAGAAATACATGGTGTATGCACCCTTTGTCGTGGGAATGTTTGTGGAGGGTCCAACGAGTCTCCTGCCTCCAACGCAGAAGTACCATCTCAATGA 1626 0.4317 MGSTSSRLRSRPSTPRVNGTNRFRFSSLLCGGSAFRSTYEMEDQPTELQRDSATEFNDENQKVVEESSISCTEARIGCSPRTETVSSSDTRTELSEISTVEGSSRSVSTSYQTKYLSESKELVPPHQVSADHSYDESYRDSSNTASTSFVEQQSSDPVSVNISANKDAVNNIDGSVDSGVSQISREIMYPRRSTSHEQGDSSANSISIENHTHSAVAIHNSELVHVAQVSNLPVTSELPENETRQDTIPSGLGFLVSNRERGQGNDSMFLVDVVAISSNVLPDGNADVSHRDARRDSRRLSWDAFSRRSSRRFGDSRTFVFSAGDVDDPSSQDQWLLDLSNNSSNDRVGDDSGYLGSRIHRLNERMRHSRSEIWERLRGGLDEVGRLNPSCPLGLHPDGMCSCESFQMAEESSTRASISRIAMLAEALFEVLDEIHRQPVSLALSMVSLPAPESIVDSFPLKCHKKIDTADNGNDAEQCYICLAEYEEGDKIRVLPCNHEYHMSCVDKWLKEIHGVCTLCRGNVCGGSNESPASNAEVPSQ 541
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele17g0714 541 MobiDBLite consensus disorder prediction 80 101 - -
Lele17g0714 541 SUPERFAMILY RING/U-box 464 524 - -
Lele17g0714 541 MobiDBLite consensus disorder prediction 117 158 - -
Lele17g0714 541 MobiDBLite consensus disorder prediction 139 158 - -
Lele17g0714 541 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 456 527 IPR013083 -
Lele17g0714 541 FunFam Putative RING zinc finger domain superfamily protein 446 526 - -
Lele17g0714 541 SMART ring_2 479 520 IPR001841 -
Lele17g0714 541 Pfam Ring finger domain 478 521 IPR001841 -
Lele17g0714 541 MobiDBLite consensus disorder prediction 1 22 - -
Lele17g0714 541 ProSiteProfiles Zinc finger RING-type profile. 479 521 IPR001841 -
Lele17g0714 541 PANTHER RING ZINC FINGER DOMAIN SUPERFAMILY PROTEIN-RELATED 1 540 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele17g0714 Lele-ChrLele17 18877146 18880693 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele17g0714 390 525 C3H Transcription Factor Family AT5G45290 51.656 5.28e-40 150