Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele17g0712 ATGGCAGGAAATCTTCCCGGAGTAGAGTGTGCTCGAAGGAGAAGGTTTCATCAGAGTGGAGTATGGTCCGATTCACCATCCTCCATGGTTCCTCATACTTCCACTAGACGCTCTTCTTTCTGCTTGTACACTAGCAACCATGAATCTCTGTCTTCTTCCTCTTTACTGAAAAGAACCTTGATATACCAGGCATACCAACATGAAATGCTGGGAGGTGCAGCTGGAGAAGCGAAACAGAGATTGGATGAGAGATTAGGAACACAGAGGAAAACAGAGCCTAAAAGTAATAAGTACAAGAGCAGAGAGAAGGTGAGGAGTGAGGCAGAGTTGCAGATAGAGATATATGGGGCGACGAAAAATGGAAGCAGGAGATTCAGTTGGAGCAAATTGAGCTGGAAGGCCTCAGAACAAGAGGAGTGTGCAGTGTGCTTAGAATCATTCAAGAATGGGGAAACTCTGATAAACCTTCCATGTGCACACAGGTTCCATTCAAGGTGTTTGCAGCCATGGCTGCAAAATAATTCTCATTGTCCTTGTTGCAGAACCACCATCATCATTTCTCACTAG 567 0.4515 MAGNLPGVECARRRRFHQSGVWSDSPSSMVPHTSTRRSSFCLYTSNHESLSSSSLLKRTLIYQAYQHEMLGGAAGEAKQRLDERLGTQRKTEPKSNKYKSREKVRSEAELQIEIYGATKNGSRRFSWSKLSWKASEQEECAVCLESFKNGETLINLPCAHRFHSRCLQPWLQNNSHCPCCRTTIIISH 188
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele17g0712 188 MobiDBLite consensus disorder prediction 76 102 - -
Lele17g0712 188 ProSiteProfiles Zinc finger RING-type profile. 140 181 IPR001841 -
Lele17g0712 188 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF103 87 182 IPR042494 GO:0004842|GO:0016567
Lele17g0712 188 Pfam Ring finger domain 139 181 IPR001841 -
Lele17g0712 188 MobiDBLite consensus disorder prediction 77 102 - -
Lele17g0712 188 CDD RING-H2_PA-TM-RING 139 181 - -
Lele17g0712 188 FunFam Zinc finger family protein 114 186 - -
Lele17g0712 188 SUPERFAMILY RING/U-box 127 186 - -
Lele17g0712 188 SMART ring_2 140 180 IPR001841 -
Lele17g0712 188 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 121 186 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele17g0712 Lele-ChrLele17 18868788 18869624 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele17g0712 1 85 C3H Transcription Factor Family AT2G15580 51.064 5.18e-18 73.9
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele17g0712 17 18868788 18869624 Lele19g0845 19 5114021 5114852 hybridization
Lele17g0712 17 18868788 18869624 Lele20g0613 20 13441637 13442453 hybridization