LGRPv2

Gene search

Sequence information

Show entries

Search:

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele17g0709	ATGGCTTTTCACGACCATCTACCTCAAGAACTAGCTTTTCAGCCTTTTACGGATGAGCAACAGTTAAGTCAAAACAGGGACATGCAGAGGATGATGCCGTTCTCCGCCGCAGCCGGGGGAGGGCCGGCACCGACGTGGCTCGTGAATAGCGCGGGGTCGTCTCTCCGGCAGCAGAATTTCCTCCACTTGCAGTCTGACTCGGCCGATGATGTTCGGGGGAGTATGATGCCGTCGTCGGAGAGGAGCAACGATCGAGACGGTGGCGATCGGAGCCGGGGCGACGGAAATATTGAATCTGAGGATTTGGCAGAGTACAAAGCTGACATTTTGGGACATCCCCTTTACGACCAGCTCTTGTCTGCTCATGTGTCGTGTTTAAGGATTGCCACTCCGGTGGACCAGCTTCCTAGAATCGACGCCCAGCTTCAACAATCACAGCGCGTTCTTGAAAAATACTCTGGTCTCGGAAATGGTGTTGTTGATGAGAAGGAGCTTGACCAGTTCATGACGCATTACGTTCTATTGCTCTGTGCTTTCAAAGAACAACTCCAACAACATGTCCGAGTTCATGCCATGGAAGCTGTCATGGCTTGTTGGGAGCTTGAGCAGTCTCTTCAGAGCTTGACTGGTGTGTCGCCAGGAGAAGGGACAGGAGCAACAATGTCGGACGATGAAGATGAGCAGGTAGAGAGCAATGCTAACCTCTACGAAGGTGGCCTTGATGCTGGTGACAACCTCGGATTTGGTCCTCTCGTTCCCACTGAAACTGAAAGATCTTTGATGGAGCGTGTCAGACAGGAATTGAAGCATGAACTCAAGCAGGGTTACAAGGAGAAGATTGTGGATATAAGAGAAGAGATTCTGAGAAAGAGGCGTGCTGGGAAGCTGCCGGGTGACACAACCTCGCTCTTGAAAGCTTGGTGGCAATCACATTCTAAATGGCCTTATCCTACTGAGGAAGACAAGGCAAGGTTGGTGCAGGAAACAGGATTACAACTAAAGCAAATAAATAACTGGTTTATTAATCAAAGGAAAAGGAATTGGCATACCAATCCTTCATCTTCTACCTCCTCTAAAAGCAAGCGCAAGAGTAATGCAGGAGAAACCAGTAACCAGAGCTTTATGTGA	1128	0.4947	MAFHDHLPQELAFQPFTDEQQLSQNRDMQRMMPFSAAAGGGPAPTWLVNSAGSSLRQQNFLHLQSDSADDVRGSMMPSSERSNDRDGGDRSRGDGNIESEDLAEYKADILGHPLYDQLLSAHVSCLRIATPVDQLPRIDAQLQQSQRVLEKYSGLGNGVVDEKELDQFMTHYVLLLCAFKEQLQQHVRVHAMEAVMACWELEQSLQSLTGVSPGEGTGATMSDDEDEQVESNANLYEGGLDAGDNLGFGPLVPTETERSLMERVRQELKHELKQGYKEKIVDIREEILRKRRAGKLPGDTTSLLKAWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHTNPSSSTSSKSKRKSNAGETSNQSFM	375

Showing 1 to 1 of 1 entries

Previous1Next

Annotation information

Show entries

Search:

Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Lele17g0709	375	SUPERFAMILY	Homeodomain-like	289	354	IPR009057	-
Lele17g0709	375	MobiDBLite	consensus disorder prediction	82	97	-	-
Lele17g0709	375	SMART	KNOX1_2	103	147	IPR005540	GO:0003677\|GO:0005634
Lele17g0709	375	SMART	KNOX2_2	154	210	IPR005541	GO:0003677\|GO:0005634
Lele17g0709	375	SMART	HOX_1	289	354	IPR001356	GO:0003677
Lele17g0709	375	MobiDBLite	consensus disorder prediction	65	97	-	-
Lele17g0709	375	ProSiteProfiles	ELK domain profile.	267	287	IPR005539	GO:0003677
Lele17g0709	375	Pfam	KNOX1 domain	105	146	IPR005540	GO:0003677\|GO:0005634
Lele17g0709	375	FunFam	homeobox protein knotted-1-like 3 isoform X1	288	349	-	-
Lele17g0709	375	SMART	ELK_2	267	288	IPR005539	GO:0003677

Showing 1 to 10 of 18 entries

Previous1 2Next

Duplication type information

Show entries

Search:

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele17g0709	Lele-ChrLele17	18856848	18860391	Dispersed/Wgd

Showing 1 to 1 of 1 entries

Previous1Next

Functional genes information

Show entries

Search:

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lele17g0709	1	363	Homeobox Transcription Factor Family	AT5G25220	62.648	7.66e-175	491

Showing 1 to 1 of 1 entries

Previous1Next

Transcription factors information

Show entries

Search:

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	HB-KNOX	Lele17g0709		KNOX2	2.7e-19	No_clan

Showing 1 to 1 of 1 entries

Previous1Next

Event-related genes

Show entries

Search:

Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
Lele17g0709	17	18856848	18860391	Lele17g0709	17	18856848	18860391	ECH
Lele17g0709	17	18856848	18860391	Lele19g0847	19	5122577	5126099	hybridization
Lele17g0709	17	18856848	18860391	Lele20g0611	20	13432102	13435829	hybridization

Showing 1 to 3 of 3 entries

Previous1Next