Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele17g0709 ATGGCTTTTCACGACCATCTACCTCAAGAACTAGCTTTTCAGCCTTTTACGGATGAGCAACAGTTAAGTCAAAACAGGGACATGCAGAGGATGATGCCGTTCTCCGCCGCAGCCGGGGGAGGGCCGGCACCGACGTGGCTCGTGAATAGCGCGGGGTCGTCTCTCCGGCAGCAGAATTTCCTCCACTTGCAGTCTGACTCGGCCGATGATGTTCGGGGGAGTATGATGCCGTCGTCGGAGAGGAGCAACGATCGAGACGGTGGCGATCGGAGCCGGGGCGACGGAAATATTGAATCTGAGGATTTGGCAGAGTACAAAGCTGACATTTTGGGACATCCCCTTTACGACCAGCTCTTGTCTGCTCATGTGTCGTGTTTAAGGATTGCCACTCCGGTGGACCAGCTTCCTAGAATCGACGCCCAGCTTCAACAATCACAGCGCGTTCTTGAAAAATACTCTGGTCTCGGAAATGGTGTTGTTGATGAGAAGGAGCTTGACCAGTTCATGACGCATTACGTTCTATTGCTCTGTGCTTTCAAAGAACAACTCCAACAACATGTCCGAGTTCATGCCATGGAAGCTGTCATGGCTTGTTGGGAGCTTGAGCAGTCTCTTCAGAGCTTGACTGGTGTGTCGCCAGGAGAAGGGACAGGAGCAACAATGTCGGACGATGAAGATGAGCAGGTAGAGAGCAATGCTAACCTCTACGAAGGTGGCCTTGATGCTGGTGACAACCTCGGATTTGGTCCTCTCGTTCCCACTGAAACTGAAAGATCTTTGATGGAGCGTGTCAGACAGGAATTGAAGCATGAACTCAAGCAGGGTTACAAGGAGAAGATTGTGGATATAAGAGAAGAGATTCTGAGAAAGAGGCGTGCTGGGAAGCTGCCGGGTGACACAACCTCGCTCTTGAAAGCTTGGTGGCAATCACATTCTAAATGGCCTTATCCTACTGAGGAAGACAAGGCAAGGTTGGTGCAGGAAACAGGATTACAACTAAAGCAAATAAATAACTGGTTTATTAATCAAAGGAAAAGGAATTGGCATACCAATCCTTCATCTTCTACCTCCTCTAAAAGCAAGCGCAAGAGTAATGCAGGAGAAACCAGTAACCAGAGCTTTATGTGA 1128 0.4947 MAFHDHLPQELAFQPFTDEQQLSQNRDMQRMMPFSAAAGGGPAPTWLVNSAGSSLRQQNFLHLQSDSADDVRGSMMPSSERSNDRDGGDRSRGDGNIESEDLAEYKADILGHPLYDQLLSAHVSCLRIATPVDQLPRIDAQLQQSQRVLEKYSGLGNGVVDEKELDQFMTHYVLLLCAFKEQLQQHVRVHAMEAVMACWELEQSLQSLTGVSPGEGTGATMSDDEDEQVESNANLYEGGLDAGDNLGFGPLVPTETERSLMERVRQELKHELKQGYKEKIVDIREEILRKRRAGKLPGDTTSLLKAWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHTNPSSSTSSKSKRKSNAGETSNQSFM 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele17g0709 375 SUPERFAMILY Homeodomain-like 289 354 IPR009057 -
Lele17g0709 375 MobiDBLite consensus disorder prediction 82 97 - -
Lele17g0709 375 SMART KNOX1_2 103 147 IPR005540 GO:0003677|GO:0005634
Lele17g0709 375 SMART KNOX2_2 154 210 IPR005541 GO:0003677|GO:0005634
Lele17g0709 375 SMART HOX_1 289 354 IPR001356 GO:0003677
Lele17g0709 375 MobiDBLite consensus disorder prediction 65 97 - -
Lele17g0709 375 ProSiteProfiles ELK domain profile. 267 287 IPR005539 GO:0003677
Lele17g0709 375 Pfam KNOX1 domain 105 146 IPR005540 GO:0003677|GO:0005634
Lele17g0709 375 FunFam homeobox protein knotted-1-like 3 isoform X1 288 349 - -
Lele17g0709 375 SMART ELK_2 267 288 IPR005539 GO:0003677
Lele17g0709 375 CDD homeodomain 290 351 IPR001356 GO:0003677
Lele17g0709 375 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 83 361 - -
Lele17g0709 375 MobiDBLite consensus disorder prediction 344 375 - -
Lele17g0709 375 ProSiteProfiles 'Homeobox' domain profile. 287 350 IPR001356 GO:0003677
Lele17g0709 375 Pfam Homeobox KN domain 307 346 IPR008422 GO:0003677|GO:0006355
Lele17g0709 375 Gene3D - 293 370 - -
Lele17g0709 375 Pfam ELK domain 267 288 IPR005539 GO:0003677
Lele17g0709 375 Pfam KNOX2 domain 160 209 IPR005541 GO:0003677|GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele17g0709 Lele-ChrLele17 18856848 18860391 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele17g0709 1 363 Homeobox Transcription Factor Family AT5G25220 62.648 7.66e-175 491
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Lele17g0709 KNOX2 2.7e-19 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele17g0709 17 18856848 18860391 Lele17g0709 17 18856848 18860391 ECH
Lele17g0709 17 18856848 18860391 Lele19g0847 19 5122577 5126099 hybridization
Lele17g0709 17 18856848 18860391 Lele20g0611 20 13432102 13435829 hybridization