Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele17g0612 ATGCCTCCTCCTAATCCTCCTCCTCCTGTTCATCACCATGAACAAACCCAACCAAAGCCCAGCCCCAAGCTCCTCTCAATCCTCCTTGAAGCCGTCATCATGACCCTTCTCACCTCCGTCTTTTTCATCTTCCTCGGTTTCGCCGCCTTCGTCCTCCTCCATCTCTGCTTCATCGGCGGCATCCTCCACCGCTTCCGCTCCCGCCCCACCACCCAACTCGGAGCTTCATCCAATGGAATCGCGCCACGTGATGTCAAGAAGCTTCCCCACTTCCGGGTTGCTAGCGGCACCGAACCCGAACCCGAAACCGAATGCGTTGTCTGCTTGGACGGCTTCAGGAGCGGCCACTGGTGCAGAAAGCTCGCCGGATGTGGCCATGTGTTCCACCGGAGATGTGTGGATACGTGGTTGGTCAAGGTGGCTACGTGTCCCACATGCAGGACACCTGTTCGATCAAGTGCAGGGAGCGATTTAGGTTCGGCTCTAGATGTCAATACAGAGGATGCTGTGCATCATCGAACATCTAGTAGGGGCAGTGCTTTCAGGATTTTTTAG 555 0.5586 MPPPNPPPPVHHHEQTQPKPSPKLLSILLEAVIMTLLTSVFFIFLGFAAFVLLHLCFIGGILHRFRSRPTTQLGASSNGIAPRDVKKLPHFRVASGTEPEPETECVVCLDGFRSGHWCRKLAGCGHVFHRRCVDTWLVKVATCPTCRTPVRSSAGSDLGSALDVNTEDAVHHRTSSRGSAFRIF 184
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele17g0612 184 ProSiteProfiles Zinc finger RING-type profile. 105 147 IPR001841 -
Lele17g0612 184 SUPERFAMILY RING/U-box 99 152 - -
Lele17g0612 184 Pfam Ring finger domain 104 147 IPR001841 -
Lele17g0612 184 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 12 162 - -
Lele17g0612 184 SMART ring_2 105 146 IPR001841 -
Lele17g0612 184 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 80 155 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele17g0612 Lele-ChrLele17 18237054 18237608 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele17g0612 19 151 C3H Transcription Factor Family AT2G18670 46.269 1.20e-32 113