LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele17g0583	ATGGGTCGAGCTCCATGCTGTGACAAAGCTAACGTGAAGAAAGGACCTTGGTCCCCAGAAGAGGATGCTATACTCAAAGCTTATATCGATAAACATGGAACGGCAAGCAACTGGATTGCTCTTCCTCAAAAAATTGGGCTCAAGAGGTGTGGGAAAAGTTGCAGACTAAGATGGTTAAATTACCTGAGGCCTAATATCAAGCATGGTGGTTTCACTGAAGAAGAAGACAACATCATTAGCAGCCTCTACATTAGCATTGGCAGCAGGTGGTCCATTATTTCGGCTCAGCTTCCTGGAAGAACAGACAACGACATCAAGAATTATTGGAACACTAGACTGAAGAAGAAACTACTTGGTAGGCGAAAATTAACAGAAAACAGTACAGATCAGGACAAACCTAATAATTCTGATCACATTCTCAGCAACTCGGCTATCGAGAGGCTTCAACTTCACATGCAACTTCAAAACCCTAATTTCTCTTTCTACAACAATCCTTCCCTCTGGCCTAAGTTGCATCCTCTCCAACAAAAAGTGATCCACAACACCCTACAATCCCTCAACCATACCTCCGATTTCACAACAACCATACCACAAAAAGATCATAATCAACCTCACAAACCAGCTTCTGTTAATTATAATAGTACTGAACCGGAAGGTGTAAAGATCAGCAGAAACCTGGGGAGCTCCGGTAATCCGGCGGATATGGACCGGATTGATGAGTTTGATATGGGAATGGATCGAGTTTCTGCACTGCAAACTGAGCTTAATGACATTCTCATGAGTGGTTACGTGACATCATCACAGCAGAAGCAGGAGGAGCAGGTAATTGGTGAATATGGTTGCTGCGGGGAGATCATGAGTGGTTCGTCGAAGGACAATTTGAGCTGGTGGTCCAATGATTTTGATGCCAAATCAGCATTATCCCCCAACTCTGGGGATTCAACTCCTACCACCACTCCTCAGATTTTTCAGCCAGATGATCATCATCAGGGGATGTTTCAAGATTATGAACTAGGTTATATTTTGTAG	1029	0.4344	MGRAPCCDKANVKKGPWSPEEDAILKAYIDKHGTASNWIALPQKIGLKRCGKSCRLRWLNYLRPNIKHGGFTEEEDNIISSLYISIGSRWSIISAQLPGRTDNDIKNYWNTRLKKKLLGRRKLTENSTDQDKPNNSDHILSNSAIERLQLHMQLQNPNFSFYNNPSLWPKLHPLQQKVIHNTLQSLNHTSDFTTTIPQKDHNQPHKPASVNYNSTEPEGVKISRNLGSSGNPADMDRIDEFDMGMDRVSALQTELNDILMSGYVTSSQQKQEEQVIGEYGCCGEIMSGSSKDNLSWWSNDFDAKSALSPNSGDSTPTTTPQIFQPDDHHQGMFQDYELGYIL	342

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lele17g0583	342	Gene3D	-	70	140	-	-
	Lele17g0583	342	CDD	SANT	71	113	IPR001005	-
	Lele17g0583	342	Gene3D	-	7	68	-	-
	Lele17g0583	342	MobiDBLite	consensus disorder prediction	305	328	-	-
	Lele17g0583	342	SUPERFAMILY	Homeodomain-like	11	109	IPR009057	-
	Lele17g0583	342	CDD	SANT	16	62	IPR001005	-
	Lele17g0583	342	PANTHER	OS09G0431300 PROTEIN	1	241	-	-
	Lele17g0583	342	ProSiteProfiles	Myb-like domain profile.	63	113	IPR001005	-
	Lele17g0583	342	MobiDBLite	consensus disorder prediction	305	325	-	-
	Lele17g0583	342	FunFam	Transcription factor RAX3	7	68	-	-
	Lele17g0583	342	SMART	sant	67	115	IPR001005	-
	Lele17g0583	342	SMART	sant	13	64	IPR001005	-
	Lele17g0583	342	MobiDBLite	consensus disorder prediction	193	230	-	-
	Lele17g0583	342	MobiDBLite	consensus disorder prediction	193	233	-	-
	Lele17g0583	342	ProSiteProfiles	Myb-like domain profile.	9	62	IPR001005	-
	Lele17g0583	342	ProSiteProfiles	Myb-type HTH DNA-binding domain profile.	63	117	IPR017930	-
	Lele17g0583	342	Pfam	Myb-like DNA-binding domain	69	111	IPR001005	-
	Lele17g0583	342	Pfam	Myb-like DNA-binding domain	14	62	IPR001005	-
	Lele17g0583	342	ProSiteProfiles	Myb-type HTH DNA-binding domain profile.	9	62	IPR017930	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele17g0583	Lele-ChrLele17	17930195	17931674	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lele17g0583	1	302	MYB Transcription Factor Family	AT5G57620	55.975	5.85e-100	296

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	MYB	Lele17g0583		Myb_DNA-binding	2.8e-13	CL0123