Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele17g0564 ATGGGACTATATCAGTGCTACGGAATTTGCTACCCTGTGCCTGGTTGTACAATTCAAATTGTTGGCCTTTCCTCACTGGTTCAAAATGAGAGTGATAGCTTCACTAGTTCAACTAATATCTCCTAGGTTCGTTTGCACCATAGTTTTGAAGTTCTTATGTTACCGTTTCTTGCAGTGTCGAGCCCATTTGCTAAGAGAAGGCATCCATTAGTAGACTCAGCAGTAGTTTCAGAAATTAGGAGATGCCTTGTGGAGGGGATCGAATTCCAAGATGAGTTGCTGAACTTTAGGCAAGATGGATCTCCACTGATGAACAGATTGCGGTTGACACCTATATATGGGGATGATGAGACTATAACACATGTCATTGGAATTCAGTTCTTCGCAGAGGCAAACATTGATCTTGGTCCTGTCCCAGGTTCTACAATTAAGGAATCTGCTAAGTCATCTGATCGATTTCGTTCTTCTGCCCTTGCCTCATTATGTCCTCCTCCAACAGGGGACCGTAATGTTTCTCATGGATTTTGTGGGATATTGCAGTTGAGTGATGAGGTGTTGTCTCTCAAGATACTCTCTCGCTTAACTCCAAGAGATATTGCATCGGTTGGCTCTGTTTGCAGGCAATTGTATGAGCTAACAAGAAATGAAGATCTTTGGAGAATGGTATGTCAAAATGCATGGGGAAGTGAAACTACACGTGTTTTAGAGACTGTGCCTGCTGCAAGAAGACTTGGATGGGGTAGGCTGGCGAGGGAATTGACAACTCTTGAAGCTGCAGCATGGAGAAAGTTGACTGTTGGGGGTGCTGTTGAACCCTCACGCTGTAATTTTAGTGCTTGTGCAGTTGGTAACAGAGTTGTGCTATTTGGTGGTGAAGGGGTTAACATGCAACCTATGAATGACACCTTTGTATTAGATCTCAATTCTCGTAATCCTGAGTGGCAACACGTCCACGTGAGCTCTCCTCCTCCAGGTCGTTGGGGCCATACACTTTCTTGTGTTAATGGCTCTCATTTGGTTGTATTTGGAGGCTGTGGAAGGCAGGGTTTGCTCAATGATGTGTTTGTGCTGGACCTGGATGCAAAGCCTCCGACTTGGCGTGAAATTTCTGGATTGGCACCACCACTTCCCAGATCATGGCATAGCTCCTGTACTCTTGATGGAACTAAGTTGATTGTTTCTGGTGGCTGTGCAGATTCTGGAGTGCTTTTGAGTGATACATGCCTGCTTGATCTGTCAATGGAGAAACCTGTTTGGAGAGAGATACCAGTTGCATGGACCCCACCTTCTCGTCTGGGCCACACACTGTCTGTCTATGGTGGTAGGAAAATACTGATGTTTGGGGGTCTGGCCAAGAGTGGGCCATTACGGTTCCGCTCTAGTGATGTATTCACAATGGATTTGAGTGAGGAGGAGCCATGTTGGACATGTGTAACTGGCAGTGGAATGCCCTGTTCTGGGAATCCTAGGGGTATAGCTCCTCCCCCTAGACTTGATCATGTGGCTATCAGTCTTCCTGGCGGGAGAATTCTGGTATTTGGAGGGTCTGTTGCAGGTCTTCATTCTTCCTCCCAGCTCTACATACTGGACCCAACTGATGAGAAGCCTACTTGGAGAATTTTAAATGTACCGGGGCGCCCCCCGAGATTTGCTTGGGGACATAGCACTTGTGTTGTTGGGGGGACAAGAGCTATTGTACTGGGTGGTCAGACTGGAGAGCAATGGATGCTAAGCGAGCTCCATGAGCTTTCTCTGGCAAATTCTGTGATCTAA 1773 0.4659 MGLYQCYGICYPVPGCTIQIVGLSSLVQNESDSFTSSTNISXVRLHHSFEVLMLPFLAVSSPFAKRRHPLVDSAVVSEIRRCLVEGIEFQDELLNFRQDGSPLMNRLRLTPIYGDDETITHVIGIQFFAEANIDLGPVPGSTIKESAKSSDRFRSSALASLCPPPTGDRNVSHGFCGILQLSDEVLSLKILSRLTPRDIASVGSVCRQLYELTRNEDLWRMVCQNAWGSETTRVLETVPAARRLGWGRLARELTTLEAAAWRKLTVGGAVEPSRCNFSACAVGNRVVLFGGEGVNMQPMNDTFVLDLNSRNPEWQHVHVSSPPPGRWGHTLSCVNGSHLVVFGGCGRQGLLNDVFVLDLDAKPPTWREISGLAPPLPRSWHSSCTLDGTKLIVSGGCADSGVLLSDTCLLDLSMEKPVWREIPVAWTPPSRLGHTLSVYGGRKILMFGGLAKSGPLRFRSSDVFTMDLSEEEPCWTCVTGSGMPCSGNPRGIAPPPRLDHVAISLPGGRILVFGGSVAGLHSSSQLYILDPTDEKPTWRILNVPGRPPRFAWGHSTCVVGGTRAIVLGGQTGEQWMLSELHELSLANSVI 590
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele17g0564 590 Pfam Kelch motif 431 482 IPR011498 GO:0005515
Lele17g0564 590 Pfam Kelch motif 498 545 IPR011498 GO:0005515
Lele17g0564 590 SUPERFAMILY Galactose oxidase, central domain 260 577 IPR011043 -
Lele17g0564 590 SUPERFAMILY F-box domain 170 239 IPR036047 GO:0005515
Lele17g0564 590 Gene3D PAS domain 47 137 - -
Lele17g0564 590 Pfam Galactose oxidase, central domain 338 385 - -
Lele17g0564 590 Pfam F-box-like 186 224 IPR001810 GO:0005515
Lele17g0564 590 FunFam Putative LOV domain-containing protein 251 455 - -
Lele17g0564 590 FunFam Adagio protein 1 175 222 - -
Lele17g0564 590 Gene3D - 175 222 - -
Lele17g0564 590 FunFam Putative LOV domain-containing protein 456 589 - -
Lele17g0564 590 Pfam Galactose oxidase, central domain 274 324 - -
Lele17g0564 590 SUPERFAMILY PYP-like sensor domain (PAS domain) 62 126 IPR035965 -
Lele17g0564 590 Gene3D - 478 589 IPR015915 GO:0005515
Lele17g0564 590 Gene3D - 252 477 IPR015915 GO:0005515
Lele17g0564 590 PANTHER BACTERIOOPSIN TRANSCRIPTIONAL ACTIVATOR 58 586 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele17g0564 Lele-ChrLele17 17794171 17796724 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele17g0564 323 569 Acyl Lipid Metabolism Gene Families AT3G05420 24.627 6.37e-06 47.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele17g0564 17 17794171 17796724 Lele19g0979 19 6106132 6120027 hybridization
Lele17g0564 17 17794171 17796724 Lele20g0469 20 12406588 12411080 hybridization