Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele17g0563 ATGGAGTGGGACAGCGATTCCGATCTCAGCGCGGATGAGGACGAGAGTTTCATGTTCGACGATGCTGGTCATCTTCCCTTCCCCGTCTGCAACTTGCTCCAAACGGCGCCGTGTGGGATTGTCGTCACGGACGCTCTCGAGCCGGACCATCCTATTATATATGTCAATACGGTGTTCGAGATGGTCACTGGGTATCGGGCAGAGGAAGTGCTTGGTCGCAACTGGTCAGTTTTTGAGGTCTTGATTGTTTATTCGATTGCATCTCTCTTTTGCTTTAGTTCCTTTTTACGATCAATGAGTGCGGTTAGCTACACTTTTGCAGGACTGAAGACGTGTAATTTTTTTGGGAATGATTTCGGTTTCGTCATTGATCAATGGAGATGA 384 0.4792 MEWDSDSDLSADEDESFMFDDAGHLPFPVCNLLQTAPCGIVVTDALEPDHPIIYVNTVFEMVTGYRAEEVLGRNWSVFEVLIVYSIASLFCFSSFLRSMSAVSYTFAGLKTCNFFGNDFGFVIDQWR 127
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele17g0563 127 TIGRFAM sensory_box: PAS domain S-box protein 32 77 IPR000014 -
Lele17g0563 127 Pfam PAS fold 32 74 IPR013767 GO:0006355
Lele17g0563 127 CDD PAS 36 76 IPR000014 -
Lele17g0563 127 SUPERFAMILY PYP-like sensor domain (PAS domain) 31 78 IPR035965 -
Lele17g0563 127 Gene3D PAS domain 22 89 - -
Lele17g0563 127 ProSiteProfiles PAS repeat profile. 32 81 IPR000014 -
Lele17g0563 127 PANTHER BACTERIOOPSIN TRANSCRIPTIONAL ACTIVATOR 13 75 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele17g0563 Lele-ChrLele17 17789877 17790260 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele17g0563 33 74 AGC Kinase Gene Family AT3G45780 47.619 1.28e-06 44.3