Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele17g0539 ATGAGATTACATTATCTTGCTCTTGCTTACATAATTGAAGTGTTTCATATCTCAAACAATCATTCAAAAGAGCACAATATGCTTTTGTTGGTGGTAAAGCTGCAATTACGAGCTGTTAAAACTTCAGATCCTCCTCAATATTCCTCTTCCATTACAGGTGTTGTTATGGCTCTCTCGAGTAATTTTGGGGGGAATAGTCACTTGTGCCTTGGGTTTATTACCTTCGAATCACAAAAGAATGTAAATATCAGAGGATCTAGAAAATACAAGAATTCAAATGCGCAAACTGAGTTAAAGCCATGCTCATCATTGAAATTCAAAACCAGTAGCCCAAAATCCCAAGTGAAGAAGCATAAATTAAAACCAAAATCTCGTGCACACGGAGTTGGTGCAAATATATCAAGGAAGGCAGTCACTGATTCTTCAAAGGAGGACCCAAGCAATGACTTTTCAGATAAACACTTGATCATTAGAAAAAGTCTACATAAAACCAAAGGAAATCCATCACAGAAGCCCAGCTCATCAAAGCCTCAAGGTGAAAAGGTCTCTCTTGGCTCTAAGAAAGAGGGTAAAGATGTTGACGGGGACGTAAATACTCAGAAGCTTAAAAGGAGAGGGAGAAAAAAGAAAAATAGAAGAAATAATGTGGATCTTGATGATGCTTCACGCCTGCAGAGGAGACTAAGGTATCTTCTGATTAAAATAAAGCGGGAGCAGAACCTCATTGATGCCTATTCTGGAGAAGGTTGGAAAGGTCAGAGTCAGGAGAAGATCAGGCCAGAAAAGGAGTTGTTAAGAGCTCGGAAGCAGATTTTACAATGTAAACTTAGTATTCGTGATGCCATTCACCAGTTGGATACTCTTAGTTCCGTGGGTAGCATTGAGGGCTCTGTCATTGCTCCAGATGGATCTGTTTACCATGAACATATATTCTGTGCAAAGTGCAAATTGCGTGAAGCTTTCCCAGATAATGATATTATACTATGTGATGGCACCTGTAACCGTGCTTTTCACCAAAAATGTCTTGATCCTCCATTGGATACTGAAAATATTCCTCCTGGAGATCAGGGCTGGTTTTGCAAGTTTTGCGAATGTAAGATGGAAATACTGGAGGCAATAAATGCTCATCTTAGGACTCATTTCTCCCTAGACAGCACTTGGCAGGATGTATTCAAGGAAGAAGCTTCCATACTTGATGGTGATGCTAGTTTACTGAATCCTGAAGAAGAATGGCCATCAGATGAATCTGATGATGATGATTATAATCCTGAAAGGAGAGAGGATAGCCGCAATATCAGTGCAGAGGATATTGATGGTGATGCATCTGATGATTCAAGCAGTTCTACCAGTCTATGGAATTCAGATGATGGATATTCTCCAGGAATAGGAAAGGAAAGCATTGACCATGAATTTTTCTCTGTGAATAGTTGCATCGATTCTGACGAATCTGGAGAGATAGCATGTGGCCTGAGGCAGCGGAAAGCAGTTGACTACAAGAAACTCTATGATGAAATGTTTGGGAAAGATGCTCCTGCACTTGAACAAGTTAGTGAAGATGAAGACTGGGGTCCAGGCAGAAGAAGGCGAAGAGAAAAAGAATCTGATGCTGCTAATACTCTGATGACTCTCCATGAAAGTGACAACAAATGTTCCAATAACGAGCAGAATGTGGTAAAGGAATTTTCTTCAGATTTCCAAAGTAAAAGGCCTTGTTTCAGGCTTCCACGCCATGCAGTTGAGAAGCTTCGCCAGGCTTTTTCAGAGAATGAACTTCCTCCCAAATCCGTGAAGGATGGTCTTTCAAAGGAGTTGGGACTAGATGCTGATAAGGTTAGCAAATGGTTCAAAAATGCTCGTTACTTAGCACTTAAAACCAGAAAGCAAACAGAAGGAGCGGAACAGCCTCAAAGCGTCACTTCTAGAAACCCAGAAGATTCTAATTTACAAAATCTGGATATAGAGCCTTTGACATCAAAGGAAACCAAAAAAGTAACTTTGACTGAACCCCAGACGAATGCTACAAATGACAGCCACAAAAAGCTCTTAAAGTCATCCCGTGGTAATCCTTTGAAGAAAAGGAAACAAGAGATATCTCCACCTCAATCAAAAGAAAATGGCAAGAAGGAATTGGTGGAGTTCAGTGATGATGTTAGCTTGAAGAAACTGTTGAAAGCAAAAAGGAAGAAAGTAACTTATAAATTTGAGGGAGACTCTGAAGCAGCAGAGTTAGAATTTGAAAGACTTAGCAAACTGAAGAATAGAGTAGGCAGTATGAAGCAAAAAGTTCTTAAAATTAAAAGTCACACGGCAAAAGGTTCAGAAGAACCCAAATCCAAAGACCCCTGGGTTATATATGTACCTGTAGCTGAGTTAAAAGAAAAAAGTTGA 2388 0.3987 MRLHYLALAYIIEVFHISNNHSKEHNMLLLVVKLQLRAVKTSDPPQYSSSITGVVMALSSNFGGNSHLCLGFITFESQKNVNIRGSRKYKNSNAQTELKPCSSLKFKTSSPKSQVKKHKLKPKSRAHGVGANISRKAVTDSSKEDPSNDFSDKHLIIRKSLHKTKGNPSQKPSSSKPQGEKVSLGSKKEGKDVDGDVNTQKLKRRGRKKKNRRNNVDLDDASRLQRRLRYLLIKIKREQNLIDAYSGEGWKGQSQEKIRPEKELLRARKQILQCKLSIRDAIHQLDTLSSVGSIEGSVIAPDGSVYHEHIFCAKCKLREAFPDNDIILCDGTCNRAFHQKCLDPPLDTENIPPGDQGWFCKFCECKMEILEAINAHLRTHFSLDSTWQDVFKEEASILDGDASLLNPEEEWPSDESDDDDYNPERREDSRNISAEDIDGDASDDSSSSTSLWNSDDGYSPGIGKESIDHEFFSVNSCIDSDESGEIACGLRQRKAVDYKKLYDEMFGKDAPALEQVSEDEDWGPGRRRRREKESDAANTLMTLHESDNKCSNNEQNVVKEFSSDFQSKRPCFRLPRHAVEKLRQAFSENELPPKSVKDGLSKELGLDADKVSKWFKNARYLALKTRKQTEGAEQPQSVTSRNPEDSNLQNLDIEPLTSKETKKVTLTEPQTNATNDSHKKLLKSSRGNPLKKRKQEISPPQSKENGKKELVEFSDDVSLKKLLKAKRKKVTYKFEGDSEAAELEFERLSKLKNRVGSMKQKVLKIKSHTAKGSEEPKSKDPWVIYVPVAELKEKS 795
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele17g0539 795 FunFam pathogenesis-related homeodomain protein 567 631 - -
Lele17g0539 795 CDD homeodomain 568 628 IPR001356 GO:0003677
Lele17g0539 795 Pfam PHD-finger 311 366 IPR019787 -
Lele17g0539 795 MobiDBLite consensus disorder prediction 679 709 - -
Lele17g0539 795 MobiDBLite consensus disorder prediction 166 181 - -
Lele17g0539 795 SMART PHD_3 311 364 IPR001965 -
Lele17g0539 795 MobiDBLite consensus disorder prediction 629 655 - -
Lele17g0539 795 MobiDBLite consensus disorder prediction 402 459 - -
Lele17g0539 795 Gene3D - 567 633 - -
Lele17g0539 795 MobiDBLite consensus disorder prediction 624 709 - -
Lele17g0539 795 MobiDBLite consensus disorder prediction 662 678 - -
Lele17g0539 795 Pfam Homeodomain 576 620 IPR001356 GO:0003677
Lele17g0539 795 MobiDBLite consensus disorder prediction 182 201 - -
Lele17g0539 795 FunFam pathogenesis-related homeodomain protein-like 303 363 - -
Lele17g0539 795 SUPERFAMILY FYVE/PHD zinc finger 303 369 IPR011011 -
Lele17g0539 795 PANTHER POLYCOMB-LIKE TRANSCRIPTION FACTOR 106 794 - -
Lele17g0539 795 SMART HOX_1 567 629 IPR001356 GO:0003677
Lele17g0539 795 MobiDBLite consensus disorder prediction 423 437 - -
Lele17g0539 795 MobiDBLite consensus disorder prediction 111 125 - -
Lele17g0539 795 MobiDBLite consensus disorder prediction 100 218 - -
Lele17g0539 795 MobiDBLite consensus disorder prediction 408 422 - -
Lele17g0539 795 MobiDBLite consensus disorder prediction 512 535 - -
Lele17g0539 795 ProSiteProfiles Zinc finger PHD-type profile. 309 366 IPR019787 -
Lele17g0539 795 ProSiteProfiles 'Homeobox' domain profile. 565 625 IPR001356 GO:0003677
Lele17g0539 795 ProSitePatterns Zinc finger PHD-type signature. 312 363 IPR019786 -
Lele17g0539 795 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 303 360 IPR013083 -
Lele17g0539 795 MobiDBLite consensus disorder prediction 138 157 - -
Lele17g0539 795 CDD PHD_PRHA_like 311 363 IPR045876 -
Lele17g0539 795 SUPERFAMILY Homeodomain-like 567 633 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele17g0539 Lele-ChrLele17 17570675 17580766 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele17g0539 214 635 Homeobox Transcription Factor Family AT4G29940 60.000 1.16e-159 481
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-PHD Lele17g0539 Homeodomain 5.7e-06 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele17g0539 17 17570675 17580766 Lele19g1001 19 6329114 6333950 hybridization
Lele17g0539 17 17570675 17580766 Lele20g0445 20 12129567 12139401 hybridization