Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele17g0535 ATGGAGAACTTCGGCCACGAATTCAATCATTACTGGGAGACGCAAATGTTCTACCAAACAGAAGAGCTCGACAGCTGGGGACTGGACGAGGCAATTTCCGGCTACTACGACTCGAGCTCGCCGGACGGCAACGCTTCGTCGTCGACGGCCTCCAAGAACATCGTCTCGGAGAGGAATCGCAGGAAGAAGCTCAACGAACGGCTCTTCGCCCTCAGAGCAGTGGTTCCTAACATTAGCAAGATGGATAAGGCATCGATAATAAAGGATGCGATTGAGTACATTCAACACTTGCACGAACAAGAGAAAAGCATCGAAGCAGAGATAATGGAGCTTGAATCTGGGAAGAACATGAACATGAACATGATGATCAACAGCAACTATGGGAATCAGAATTCAAGCTTTGAATATGAGCAAGACCTGCCTGTGCTTCTCAGGTCCAAGAGGAACAAGACAGAGCAGCAGCAGCTTTTTGAGTCCGTCTGCTCAAGAAATCCCCCCATTGAAGTCCATGAGCTAAGAGTGACATACATGGGAGAGAAGACAGTAGTGGTGAGCTTGACGTGCGGGAAGAGGACAGACACAATGGTAAAGCTGTGTGAATTGTTTGAATCGTTGAAGCTCAAGATTATCACTGCCAACATCACTTCCTTCTCTGGCCTCCTCCTCAAGACCGTCTTCATTCAGGCGGATGAAGAAGAGAAAGATGTTGTACAGATAAAGATCCAAGCAGCCATTGCAGCTCTGAATGATCCTGAAAGCCCAATGAGCATGTAA 774 0.4767 MENFGHEFNHYWETQMFYQTEELDSWGLDEAISGYYDSSSPDGNASSSTASKNIVSERNRRKKLNERLFALRAVVPNISKMDKASIIKDAIEYIQHLHEQEKSIEAEIMELESGKNMNMNMMINSNYGNQNSSFEYEQDLPVLLRSKRNKTEQQQLFESVCSRNPPIEVHELRVTYMGEKTVVVSLTCGKRTDTMVKLCELFESLKLKIITANITSFSGLLLKTVFIQADEEEKDVVQIKIQAAIAALNDPESPMSM 257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele17g0535 257 Coils Coil 94 114 - -
Lele17g0535 257 MobiDBLite consensus disorder prediction 38 57 - -
Lele17g0535 257 Pfam Helix-loop-helix DNA-binding domain 55 98 IPR011598 GO:0046983
Lele17g0535 257 SMART finulus 54 103 IPR011598 GO:0046983
Lele17g0535 257 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 40 243 - -
Lele17g0535 257 FunFam Basic helix-loop-helix (BHLH) DNA-binding superfamily protein 44 115 - -
Lele17g0535 257 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 47 113 IPR036638 GO:0046983
Lele17g0535 257 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 48 97 IPR011598 GO:0046983
Lele17g0535 257 MobiDBLite consensus disorder prediction 38 54 - -
Lele17g0535 257 Gene3D - 42 114 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele17g0535 Lele-ChrLele17 17526984 17532999 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele17g0535 6 228 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G57150 59.556 1.02e-81 243
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lele17g0535 HLH 4.4e-12 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele17g0535 17 17526984 17532999 Lele21g0900 21 6063082 6063898 CCT
Lele17g0535 17 17526984 17532999 Lele23g1151 23 17056993 17057805 CCT
Lele17g0535 17 17526984 17532999 Lele19g1006 19 6365965 6371676 hybridization
Lele17g0535 17 17526984 17532999 Lele20g0441 20 12094710 12102411 hybridization