Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele17g0526 ATGCCAGCGAAACCGAGGTTCTCTCTTCTACTTGACTGGGGAGTCGTTTTTCGAAAGATGAGTTACTCAAAGGGTTCACCTCGCCATCAAAACGACATAGAGGCGGGGAATAGTCGCTCCGGCGACTTTGATGAAGGGGAAGGTTCGTCCGATCCTTTTGATATTTCCAGTACAAAAAATGCTTCCATTGAACGGCTCAAGCGGTGGAGGCAAGCTGCGCTTGTGCTTAATGCTTCTCGTAGGTTTCGTTATACCTTGGACCTGAAAAAAGAAGAGAAGCAGCAAACATTGAGGAAGATTAGGGCGCATGCCCAAGCCATTAGGGCTGCATATCTTTTCAAAAAAGCTGCTGTGCCACCCGTGAATGGGACTCCAACACCACCTTCAGCTACTCCTGGTGACTTTCCAATTGGGCAAGAGCAGCTTGCTTCAATTTCAAGGGATCATAACAGTGATGTCCTGCAGCAATATGGAGGGGTTAGAGGGCTTGCGGAGTCGTTGAAAACCAATTTAGAGAAGGGGATTCATGGTGATGATGGTGACTTAATGAAGCGGAGGAATGCCTACGGGTCAAACAATTATCCTCGGAAGAAGCCCAGAAGTTTTTTGATGTTTGTGTGGGATGCTTGCAAGGATCTGACCCTGGTTATATTAATGGTCGCGGCAGTGGCTTCATTGGCACTAGGAATAAAATCTGAGGGCATAAAAGAAGGATGGTATGATGGAGGGAGCATTGCATTTGCAGTTATTCTTGTCATTGTGGTTACTGCTATAAGTGATTATAAGCAGTCTCTTCAGTTTCGTGATTTAAATGAGGAGAAGAGAAATATACATCTAGAGGTTATAAGAAATGGTAGAAGAGTTGAGATCTCAATCTATGATATTGTTGTTGGTGACGTGATACCTCTGAATATTGGTGACCAGGTCCCTGCTGATGGAATTTTGATAACTGGTCACTCTCTTGCAATTGATGAATCAAGTATGACTGGCGAGAGCAATATTGTTCACAAGGACTCAAAGAACCCCTTTTTGATGTCTGGATGTAAAGTTGCAGATGGCAGTGGCACTATGCTGGTTACAGGTGTTGGTATTAATACTGAGTGGGGGCTTTTAATGGCTAGTATATCAGAAGACACTGGTGAAGAAACACCCTTGCAGGTACGCTTAAATGGTGTCGCCACCTTCATTGGTATCGTTGGACTAACTGTGGCTGCTGCTGTTCTGGTTGTGCTACTGGTCAGATATTTTACTGGCCATACTGAAAACTCAGAAGGAAAGTCTCAGTTTAGGAAGGGCCATACGAAACTTGGTACTGCTATTAACGAAGCAATTAAGATAGTCACAGTTGCCGTCACCATTGTAGTGGTTGCAGTGCCTGAAGGGCTTCCTTTAGCAGTTACCTTAACACTTGCCTACTCGATGAGAAAAATGATGGCAGATAAAGCTTTGGTGAGGAGGCTTTCGGCCTGTGAGACAATGGGTTCTGCCACAACCATTTGCAGTGATAAGACTGGAACATTGACTTTGAATCAGATGACTGTGACAGAAGCTTACGTTGGGGGGAGGAAGACTGATCCTCCTCACAACAAATCTGAGCTCGCTGATAAGTACTGCTCTTTGCTTGTTGAAGGTGTTGCCCAAAACACCAATGGCAGTGTTTATGTACCTGAGGGTGGTAAGAATGTTGAGGTCTCTGGATCACCGACGGAAAAGGCAATTTTGAACTGGGGAATTCAGCTTGGGATGGATTTTGAGGCTGTCAGATCAGAGTCATCAATTATACACGTATTTCCATTCAATTCAGAGAAAAAACGTGGGGGAGTCGCAGTGAGGACGCCTGACTCTCAAGTTCATATACATTGGAAAGGTGCTGCTGAGATAGTACTGGCCTGTTGTACAGCATATTTGGATGCAAATAACCAGTCAGTAGAGATGGATGAAGAGAAGATGACATATTTTAAAAACGCTATTGAAGACATGGCTGGTGAGAGTCTTCGCTGTGTCGTCATTGCATATAGATCTTATGAAACAGAGAAAGTTCCTACTAGTGAAGAAGAACTTGCTCGCTGGTCATTACCTGAGGATGATCTTGTTTTATTGGCTATTGTTGGTCTGAAGGATCCTTGTCGACCTGGTGTCAAGGATGCAGTGCAACTTTGCCAAAAAGCAGGAGTGAAGGTGCGAATGGTCACCGGGGACAATGTGCAAACCGCAAAAGCAATTGCTCTGGAATGTGGAATACTTGGTTCATCTGCAGATGCCAGGGAGCCAAACACTATTGAAGGCAAAAGATTTCGGGAGTTATCAGACTCGGAGAGAGAGGATATTGCAGAAAGGATATCGGTTATGGGGAGGTCTTCTCCCAATGACAAGCTTTTGCTTGTGCAAGCCTTGAGAAAGAAGGGGCATATTGTTGCCGTAACTGGGGATGGAACTAATGATGCTCCTGCACTGCATGAGGCTGATATAGGTCTTGCAATGGGCATCCAAGGGACAGAAGTTGCCAAGGAGAGCTCTGATATCATCATTTTGGATGACAATTTTGCATCCGTTGTGAAGGTTGTTAGATGGGGACGGTCTGTATATGCAAATATCCAGAAATTTATCCAGTTTCAGCTTACAGTAAATGTGGCAGCTCTTGTAATTAACGTTGTTGCTGCTGTTTCTTCCGGTGATGTCCCGCTGAATACAGTGCAGCTTCTCTGGGTGAATTTGATTATGGATACACTTGGAGCACTTGCCTTGGCAACAGAACCACCAACCGATCACCTAATGGATCGATCTCCTGTGGGCCGAAAGGAACCTCTCATAACGAATATCATGTGGAGGAATTTGCTCGTACAGGCAATATACCAAATATCTGTTTTGCTTGTACTCAATTTCCAAGGCAGGACCTTACTGGGTCTAAAGCATGAAGAGTTCACCCATTCTCTCAGAGTGAAGAACACTTTAATATTTAATGCATTTGTTTTCTGTCAAATCTTTAATGAATTCAATGCTCGAAAGCCAGATGAATATAACATCTTCAAGGGAGTCACAAGAAACTACCTCTTTATGGGGATAGTGGGAATAACTCTTGTGCTTCAGATTATCATCGTTGAATTTCTGGGAAAATTCACCAAGACAGTCAGGCTTAATTGGAAGATGTGGATCATTTCCGTGGTCATTGGATTCATCAGCTGGCCCCTTGCCGCGGCTGGGAAGTTGATACCTTTGCCTGAAACTCCCTTTGTCGAGTATTTTACAAGATGTTTCGGGAGATGTTTCCGGCGATGA 3276 0.4429 MPAKPRFSLLLDWGVVFRKMSYSKGSPRHQNDIEAGNSRSGDFDEGEGSSDPFDISSTKNASIERLKRWRQAALVLNASRRFRYTLDLKKEEKQQTLRKIRAHAQAIRAAYLFKKAAVPPVNGTPTPPSATPGDFPIGQEQLASISRDHNSDVLQQYGGVRGLAESLKTNLEKGIHGDDGDLMKRRNAYGSNNYPRKKPRSFLMFVWDACKDLTLVILMVAAVASLALGIKSEGIKEGWYDGGSIAFAVILVIVVTAISDYKQSLQFRDLNEEKRNIHLEVIRNGRRVEISIYDIVVGDVIPLNIGDQVPADGILITGHSLAIDESSMTGESNIVHKDSKNPFLMSGCKVADGSGTMLVTGVGINTEWGLLMASISEDTGEETPLQVRLNGVATFIGIVGLTVAAAVLVVLLVRYFTGHTENSEGKSQFRKGHTKLGTAINEAIKIVTVAVTIVVVAVPEGLPLAVTLTLAYSMRKMMADKALVRRLSACETMGSATTICSDKTGTLTLNQMTVTEAYVGGRKTDPPHNKSELADKYCSLLVEGVAQNTNGSVYVPEGGKNVEVSGSPTEKAILNWGIQLGMDFEAVRSESSIIHVFPFNSEKKRGGVAVRTPDSQVHIHWKGAAEIVLACCTAYLDANNQSVEMDEEKMTYFKNAIEDMAGESLRCVVIAYRSYETEKVPTSEEELARWSLPEDDLVLLAIVGLKDPCRPGVKDAVQLCQKAGVKVRMVTGDNVQTAKAIALECGILGSSADAREPNTIEGKRFRELSDSEREDIAERISVMGRSSPNDKLLLVQALRKKGHIVAVTGDGTNDAPALHEADIGLAMGIQGTEVAKESSDIIILDDNFASVVKVVRWGRSVYANIQKFIQFQLTVNVAALVINVVAAVSSGDVPLNTVQLLWVNLIMDTLGALALATEPPTDHLMDRSPVGRKEPLITNIMWRNLLVQAIYQISVLLVLNFQGRTLLGLKHEEFTHSLRVKNTLIFNAFVFCQIFNEFNARKPDEYNIFKGVTRNYLFMGIVGITLVLQIIIVEFLGKFTKTVRLNWKMWIISVVIGFISWPLAAAGKLIPLPETPFVEYFTRCFGRCFRR 1091
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele17g0526 1091 Pfam E1-E2 ATPase 278 478 - -
Lele17g0526 1091 FunFam Calcium-transporting ATPase 702 853 - -
Lele17g0526 1091 FunFam Calcium-transporting ATPase 61 116 - -
Lele17g0526 1091 Gene3D - 497 853 IPR023214 -
Lele17g0526 1091 SMART Cation_ATPase_N_a_2 156 230 IPR004014 -
Lele17g0526 1091 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 507 705 IPR023299 GO:0000166
Lele17g0526 1091 PANTHER CATION TRANSPORTING ATPASE 101 1072 - -
Lele17g0526 1091 MobiDBLite consensus disorder prediction 23 56 - -
Lele17g0526 1091 SFLD p-type atpase 482 860 IPR044492 -
Lele17g0526 1091 SUPERFAMILY Calcium ATPase, transmembrane domain M 157 1071 IPR023298 -
Lele17g0526 1091 Pfam Cation transporter/ATPase, N-terminus 158 225 IPR004014 -
Lele17g0526 1091 SUPERFAMILY Calcium ATPase, transduction domain A 278 373 IPR008250 -
Lele17g0526 1091 Pfam Ca2+-ATPase N terminal autoinhibitory domain 50 92 IPR024750 GO:0005516
Lele17g0526 1091 PRINTS Sodium/potassium-transporting ATPase signature 880 901 - -
Lele17g0526 1091 PRINTS Sodium/potassium-transporting ATPase signature 619 637 - -
Lele17g0526 1091 PRINTS Sodium/potassium-transporting ATPase signature 243 263 - -
Lele17g0526 1091 PRINTS Sodium/potassium-transporting ATPase signature 493 514 - -
Lele17g0526 1091 Gene3D - 208 1061 - -
Lele17g0526 1091 SUPERFAMILY HAD-like 498 913 IPR036412 -
Lele17g0526 1091 FunFam Calcium-transporting ATPase 825 1074 - -
Lele17g0526 1091 SFLD C1.7: P-type atpase like 482 860 - -
Lele17g0526 1091 CDD P-type_ATPase_Ca_PMCA-like 184 941 - -
Lele17g0526 1091 Pfam Cation transporting ATPase, C-terminus 893 1070 IPR006068 -
Lele17g0526 1091 FunFam Calcium-transporting ATPase 510 708 - -
Lele17g0526 1091 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 775 888 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Lele17g0526 1091 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 245 414 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Lele17g0526 1091 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 440 524 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Lele17g0526 1091 FunFam Calcium-transporting ATPase 9 plasma membrane-type 354 524 - -
Lele17g0526 1091 TIGRFAM ATPase-IIB_Ca: calcium-translocating P-type ATPase, PMCA-type 150 1071 IPR006408 GO:0005388|GO:0005524|GO:0016020|GO:0070588
Lele17g0526 1091 ProSitePatterns E1-E2 ATPases phosphorylation site. 502 508 IPR018303 -
Lele17g0526 1091 Gene3D - 61 115 - -
Lele17g0526 1091 PRINTS P-type cation-transporting ATPase superfamily signature 500 514 - -
Lele17g0526 1091 PRINTS P-type cation-transporting ATPase superfamily signature 832 844 - -
Lele17g0526 1091 PRINTS P-type cation-transporting ATPase superfamily signature 324 338 - -
Lele17g0526 1091 PRINTS P-type cation-transporting ATPase superfamily signature 723 733 - -
Lele17g0526 1091 PRINTS P-type cation-transporting ATPase superfamily signature 701 712 - -
Lele17g0526 1091 PRINTS P-type cation-transporting ATPase superfamily signature 808 827 - -
Lele17g0526 1091 Pfam haloacid dehalogenase-like hydrolase 497 822 - -
Lele17g0526 1091 Gene3D - 183 376 - -
Lele17g0526 1091 FunFam Calcium-transporting ATPase 255 376 - -
Lele17g0526 1091 Gene3D - 510 708 IPR023299 GO:0000166
Lele17g0526 1091 FunFam Calcium-transporting ATPase 208 265 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele17g0526 Lele-ChrLele17 17394481 17411106 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele17g0526 21 1077 Primary Pumps ATPases AT5G57110 74.460 0.0 1596