Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele17g0508 ATGATGGAGTCTAGAATTACCAATTCTGATTCCAAGGATATCAGCAATTATCATGGAAGTGGAGTTTGCTGCATAGCCAGCAGTTCCCAAACTCGTTTCACTACTCCGGAAGCTTCACCTCCTTCAGATGTTGCCGCCCTAAGACGCCTCTCCGAGAACGTCGCATCAATCTTCGAAGCCTCGAAGTCCGATGACTTCTTTGCCGACTCCAGACTCGTTCTCGGAGACGGTAGGGAAGTTGCCGTTCACCGTTGCATTCTGGCGGCGAGAAGCCCTTTCTTCAAGAGCGTGTTCTCTGGGAAGGAGAGGAATGGGGTCAAATTGGAATTGAAGGAATTGGCTAAGGATTACGAGGTTGGTTTTGATGCGATTGTGGGCGTTGTTAGTTATTTGTATAGTGGGAAAGTAAGGTCGTCGTCCAAGGGTGTTTGTGTGTGTGTGGACGATGATTGCTCCCATCTCGGCTGTCGACCTGCTGTGGAATTCATGGCTCAACTGCTCTATGCTTCTTCGACTTTTGAAATATCTGAGTTGGTTGACCTTTATCAGAGGCATCTGCTACAAATTATTGACAAGGTAGCAGCAGATGAAATTTTGCTGGTTCTCTCTGTTGCAAATATATGTGGTAAATCCTGTGAGACACTGCTAACAAGGTGTACTGAGTTGATTGTTAAATCTGATGTTGATGTGATTACCCTTGAAAAAGCTCTGCCACAGCATATTGTGAAACGAATTATTGATAAACGTATAGAACTAGGCTCAGACAAGCCCAAGAAAATCTGTTTGCCAGATAAAGATGTGAGAATACATAGGGCTCTTGATTCTGATGATGCTGAGTTAGTTAGGTTGCTCTTAAGAGAGGGACATACTAATTTAGATGATGCTTATGCCCTTCACTATGCTGCTGCGTACTGTGATGCCAAGACCACAACTGAGCTTCTTGATCTCGGGCTCGCCGATGTTAATTGTAAAAATTCAAGGGGATATAGTGTGCTGCATGTGTCTGCAATGAGGAAGGAGCCTAAGATTATAGTGTCACTTTTAACAAAGGGAGCCCAGCCTTCTGATCTCACTTTGGATGGTAGAAAAGCCCTTCAAATTTCGAAGCGCCTCACTAAGGCGGTGGATTATTATAATGCTGAGGAAGGGAAGGCATCTTCTAGGGACAGATTGTGCATAGAGATATTAGAACAAGCTGAGAGAAGAGAGCCTTTACTTGGGGAGGCATCTTTCTCTCTTGCTATGGCAGGGGATGATTTGCGTATGAAACTGTTGTACCTTGAAAACAGAGTTGGATTGGCGAAGCTATTGTTTCCCATGGAAGCGAAAGTTGTGTTGGACATTACTCAAATTGATGGAACTTGTCCATATTCTGATATATCTCAAAATGTGAGTACTAATACTCAGAGGACAGCTGTGGATCTGAATGAGGCACCTTTTAAACTAAAGGAGGAGCACCTAGCCAGGATGAGAGCACTCTCTAGATCTGTCGAATTAGGCAAGCGATTCTTCCCTCGGTGTTCGGAAGTTTTGAACAAGATCATGGATACTAATAACCTATCACAGATTGCATGTAAGGGTAATGACACTCCTGAAGAAAGACAAGCCAAGAGAAGAAGGCACATACAGCTCCAAGAAGTTCTAAGTAAGGCTTTCAATGAGGACAAGCAGGAGTTTGATAAGTCTGCAGTCTCATCATCTTCTTCTTCAGCATCAATAGGAATGGTTAGGAAGAGGAATCCCATGAATGAACTAGACTCAACATTAAATGTAACAAAAATGAAACTTCAAAGGGAAACGAACTAA 1806 0.4341 MMESRITNSDSKDISNYHGSGVCCIASSSQTRFTTPEASPPSDVAALRRLSENVASIFEASKSDDFFADSRLVLGDGREVAVHRCILAARSPFFKSVFSGKERNGVKLELKELAKDYEVGFDAIVGVVSYLYSGKVRSSSKGVCVCVDDDCSHLGCRPAVEFMAQLLYASSTFEISELVDLYQRHLLQIIDKVAADEILLVLSVANICGKSCETLLTRCTELIVKSDVDVITLEKALPQHIVKRIIDKRIELGSDKPKKICLPDKDVRIHRALDSDDAELVRLLLREGHTNLDDAYALHYAAAYCDAKTTTELLDLGLADVNCKNSRGYSVLHVSAMRKEPKIIVSLLTKGAQPSDLTLDGRKALQISKRLTKAVDYYNAEEGKASSRDRLCIEILEQAERREPLLGEASFSLAMAGDDLRMKLLYLENRVGLAKLLFPMEAKVVLDITQIDGTCPYSDISQNVSTNTQRTAVDLNEAPFKLKEEHLARMRALSRSVELGKRFFPRCSEVLNKIMDTNNLSQIACKGNDTPEERQAKRRRHIQLQEVLSKAFNEDKQEFDKSAVSSSSSSASIGMVRKRNPMNELDSTLNVTKMKLQRETN 601
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele17g0508 601 SUPERFAMILY POZ domain 50 189 IPR011333 -
Lele17g0508 601 Gene3D - 239 478 IPR036770 -
Lele17g0508 601 ProSiteProfiles BTB domain profile. 68 140 IPR000210 GO:0005515
Lele17g0508 601 Gene3D Potassium Channel Kv1.1; Chain A 42 225 IPR011333 -
Lele17g0508 601 SMART BTB_4 68 190 IPR000210 GO:0005515
Lele17g0508 601 PANTHER REGULATORY PROTEIN NPR3 25 573 IPR044292 GO:0009862|GO:2000022|GO:2000031
Lele17g0508 601 SUPERFAMILY Ankyrin repeat 265 369 IPR036770 -
Lele17g0508 601 Coils Coil 582 601 - -
Lele17g0508 601 SMART ANK_2a 327 356 IPR002110 GO:0005515
Lele17g0508 601 SMART ANK_2a 293 323 IPR002110 GO:0005515
Lele17g0508 601 SMART ANK_2a 264 292 IPR002110 GO:0005515
Lele17g0508 601 CDD BTB_POZ_NPR_plant 48 190 - -
Lele17g0508 601 FunFam BTB/POZ domain and ankyrin repeat-containing protein NPR1 239 390 - -
Lele17g0508 601 Pfam BTB/POZ domain 62 188 IPR000210 GO:0005515
Lele17g0508 601 Pfam NPR1/NIM1 like defence protein C terminal 369 570 IPR021094 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele17g0508 Lele-ChrLele17 17281628 17284485 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Lele17g0508 NPR1_like_C 5.6e-83 No_clan