Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele17g0495 ATGCCTAATATTATAGATCTTAATATTGTTGAAGATCAAAGCCATGAGCTCATTTTTAGCCCAACCCACCATAACCAACCTTCTTCTTCTTCTTCCTCTTCTCTATCATCAAGCCCTATTCTCTTTAACCCCTCTCATCATCAGCAGCAGGATCACGCTCATGGATCTTCCTTGTGGGACTCCAAGAACTTGCAAAATCATGATTATGACGAGGCTGTTGGGAAGAATATAATTGGTTCGAGTGGTGGATCATGGAGTGATCCAGAAGAAAAGGAGGGTGGTGGTGTTGAGATCATCAGAAAGAGGGGACTGAAACTGAAAGTTTGGAAGAGATCATCAGCGAGGGATGATCAGGATGATGAAGAAAATCATCATCAAACTGAGGATATTAATGATGATTCAGTGAAGTGGATGCCTTCAAAGATGAGAATGATGAGGAAGATGATGGCTTCAGATCATAATAATAATAAGGCTTCTTCTCCTTCTTCTTCTTCTGATATCAATAATCAGAATCAGAATCAAGAAAGAGCATTATTATTATTGTCTCCTTGGGGAACTGAAAATAATAGTAGCAGCAGCAACAATTCATCAACCCACAGTAACAGTAATATCACTGTTAGGTTTTGTGCTGATTGCCACACCACCAAGACCCCTCTTTGGAGAAGTGGACCAAGAGGTCCTAAGTCACTATGCAACGCTTGTGGGATTCGACAAAGGAAAGCGAGGCGAGCCATGGCGGCTGCTGCTGCTGCAAATGGGTCGCCGCCGGCTGAGAAATCTGCAGTGAAAGGGACTTACAAGGTTCATCACAGCAAAGAGAAGAAGTTGAAATTAGAGTGTGAGACGACTCATCATCAGATGAAGAAGAAGCACAAGCTTGAAGATCATCATCATCAAGAAGCCAAGGCATCAGCTAATAATAATAACAATACTTCAAGAGGGAGATCATCATCATCATCAATAATAAACAAATTTAGTTTTGAGGATTTCACAGTAAGCTTGATGAGTAAAAACTTGGCAACTTCATCACAAGTTTTCCCTCAGGATGAGAAGGAGGCTGCAATTCTTCTCATGGCTTTATCTTGCAATGGCCTTGTTCATGGATGA 1107 0.4128 MPNIIDLNIVEDQSHELIFSPTHHNQPSSSSSSSLSSSPILFNPSHHQQQDHAHGSSLWDSKNLQNHDYDEAVGKNIIGSSGGSWSDPEEKEGGGVEIIRKRGLKLKVWKRSSARDDQDDEENHHQTEDINDDSVKWMPSKMRMMRKMMASDHNNNKASSPSSSSDINNQNQNQERALLLLSPWGTENNSSSSNNSSTHSNSNITVRFCADCHTTKTPLWRSGPRGPKSLCNACGIRQRKARRAMAAAAAANGSPPAEKSAVKGTYKVHHSKEKKLKLECETTHHQMKKKHKLEDHHHQEAKASANNNNNTSRGRSSSSSIINKFSFEDFTVSLMSKNLATSSQVFPQDEKEAAILLMALSCNGLVHG 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele17g0495 368 MobiDBLite consensus disorder prediction 288 318 - -
Lele17g0495 368 ProSiteProfiles GATA-type zinc finger domain profile. 209 239 IPR000679 GO:0006355|GO:0043565
Lele17g0495 368 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 205 243 - -
Lele17g0495 368 MobiDBLite consensus disorder prediction 249 268 - -
Lele17g0495 368 Pfam GATA zinc finger 209 242 IPR000679 GO:0006355|GO:0043565
Lele17g0495 368 ProSitePatterns GATA-type zinc finger domain. 209 234 IPR000679 GO:0006355|GO:0043565
Lele17g0495 368 MobiDBLite consensus disorder prediction 288 302 - -
Lele17g0495 368 MobiDBLite consensus disorder prediction 20 62 - -
Lele17g0495 368 MobiDBLite consensus disorder prediction 112 137 - -
Lele17g0495 368 CDD ZnF_GATA 208 236 IPR000679 GO:0006355|GO:0043565
Lele17g0495 368 MobiDBLite consensus disorder prediction 303 318 - -
Lele17g0495 368 SMART GATA_3 203 254 IPR000679 GO:0006355|GO:0043565
Lele17g0495 368 Gene3D - 207 245 IPR013088 GO:0006355|GO:0008270
Lele17g0495 368 PANTHER GATA TRANSCRIPTION FACTOR 22-RELATED 12 367 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele17g0495 Lele-ChrLele17 17156093 17157576 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele17g0495 97 368 C2C2-Gata Transcription Factor Family AT4G26150 37.676 2.27e-32 122
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Lele17g0495 GATA 5e-17 CL0167