Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele17g0468 ATGTCTATATGCTTCCGACGAGTTGACCATTCTACAATTCCTGGCCTTGCCGGCGGAGGGATGAGATCAGTTGCCGTTGCTGTCAACGGCGGCTCCAGCGCTGGCAGAGGTAGCCGGCGAGCTGTCCAGTGGGCGGTGAAGAATCTTGTGCCTCAAGCCGATAGGTTCATCTTAGTTCACGTCATGCCCAGAATCGCTTCAATTCCAACCCCATATGGAAAGTGTATCCCTGTTATGGATCTAGACGCCAATGTGGCAGCAACTTACATTAAGGATGTAAAGGAGAAGTTCGAGCGAATCTTCGTTCCATTCCAGAAACTCTGCAAAGCAAGCACAGTTGAAACTTTGTTGCTGGAAGATGACAATCCTGCAACTGCACTACTTAGATATATATCAGAATCAGAAATTCAAATATTAGTGTTGGGAACTGATTCTTCCAATTTTATAACAAGGAAGCTAAAAGGGCCAGGGATACCAACAGATGTTCTAAGATATGCTCCTGACACTTGTGACGTATATCTTGTAGCCAGAGATAGAATTATATCAAAATTAGCTGATTCTTCATCTTCACCCTCACATGAGACTAGCTCTAGGTACTCTGTATCTACACAAGGGAATCCTGGAGATGCCGATGCTTGCTACGGTAGAGAAATAACTGGACTTAATTCTTGCACAACAGGACCTGAATTTCTCCCAAACATATTCCCATCAATGTCAGAGTGGAGTTATATAGGTTCTCAAACATCTAGTCCTGCAAATTCTCTTACAAATCCCACTATAAATGAAGGCGATCTAGAAAGCTTTCGAGATGATGCTGAAACTGCAAGCATCCGCTCATTCGATTCCACAGCTTCTGCACAAATCGAACAACCAGTCATGCAAGAAGTTGAGCAGCTGCAGCTGGAATTACGGAATACTATTGCTATGTATAAACAGGTTTGTGAAGAGTTGGCTCTTTCTCAAAGTAAGGCTCGTTTACTTTCAGCTGAATATATTGAAGAATCAAGAAGAGTAAATGATTCCCTGAAAAGAGAGGAGACTTTGAGAAAGATTGCTGCTGGAGAAAAAGAAAAGTATTTGAAAGTCATGAAGGAACTCGAGGAGGCGAAAATTAAGTTTGCAAAAGAGTCATATGAAAGGCAGATAGCTGAACTTAATGTTATGAAGGAGTCTGTAGAAAGGAAGAGAATAATTGATACAATGCTCTCAAGTGACAAGAGGTACAGAAAGTACACTATGGACGAAATTAAAGAAGCGACAATCGACTTCTCTAAGGATCTTTTAATTGGTGAAGGAGGTTATGGGAAGGTTTATAAGTGCAGCCTTGATCACACTACAGTAGCTGTAAAGGTTCTTCACCAGGATGCAATTAACAAGAAAGAGGAGTTTCTGAAAGAGGTTGAGATTTTGAGTCAGTTACACCATCCACACATGGTTTTACTGCTAGGAGCCTGTCCTGAAACTGGCTGCCTTGTTTATGAATACCTGGAAAATGGAAGCCTTGATGACTATCTTTTTAATAATAACAGTGGGAAACCGCCACTTCCTTGGTTCATTCGATTCCGTATAGTTTTTGAAGTGGCTTGTGGGTTATCATTCTTGCATAGTTCAAAGCCTGAGCCAATCGTTCATCGAGATATGAAACCGGGAAATATCTTGTTGGACAGAAACTATGTGAGCAAAATTTCAGATGTTGGATTGGCTAAACTCATTTCAGACGTCGTACCTGACAACATCACTGATTACAGAGAATCTGTGCTTGCTGGTACTCTGCATTACATGGATCCGGAGTATCAGAGAACTGGTACGGTCCGACCAAAATCAGATGTGTACGCACTGGGAGTTATAACTCTTCAATTGATAACTGCTCGCCATGCACGCGGACTCATTTTGGCCGTTGAAAATGCACTTCAAAATGGCTCCTTCTCTCATATTTTAGATAAATCAGCTGGAGATTGGCCACTGACTGAGACAGAAGAGTTGGCTCAAATTGCCCTAAGATGCTCAGCACTGAGGTGCAGAGATAGACCAGATCTTGATACTGAAGTTCTTCCACTGCTCAAAAGAATCTGTGATGTGGCAAATGCTACTGTAAAAGTGGGAAGAAATAATAGAATAGGCCCACCAAGCCAATATTATTGTCCAATCCTTCAGGAAATAATGGATGATCCACATATTGCCGCGGATGGTTTTTCCTACGAGTACAGAGCAATCAAGGCATGGCTCAGCAAACACAATGTATCACCTGTAACTAAGCTTACAATGCAGCATTCTACATTGATTCCAAACCATACCTTACGTTCTGCCATTCAGGAGTGGAGATCAGGACAAAAGTGA 2337 0.4206 MSICFRRVDHSTIPGLAGGGMRSVAVAVNGGSSAGRGSRRAVQWAVKNLVPQADRFILVHVMPRIASIPTPYGKCIPVMDLDANVAATYIKDVKEKFERIFVPFQKLCKASTVETLLLEDDNPATALLRYISESEIQILVLGTDSSNFITRKLKGPGIPTDVLRYAPDTCDVYLVARDRIISKLADSSSSPSHETSSRYSVSTQGNPGDADACYGREITGLNSCTTGPEFLPNIFPSMSEWSYIGSQTSSPANSLTNPTINEGDLESFRDDAETASIRSFDSTASAQIEQPVMQEVEQLQLELRNTIAMYKQVCEELALSQSKARLLSAEYIEESRRVNDSLKREETLRKIAAGEKEKYLKVMKELEEAKIKFAKESYERQIAELNVMKESVERKRIIDTMLSSDKRYRKYTMDEIKEATIDFSKDLLIGEGGYGKVYKCSLDHTTVAVKVLHQDAINKKEEFLKEVEILSQLHHPHMVLLLGACPETGCLVYEYLENGSLDDYLFNNNSGKPPLPWFIRFRIVFEVACGLSFLHSSKPEPIVHRDMKPGNILLDRNYVSKISDVGLAKLISDVVPDNITDYRESVLAGTLHYMDPEYQRTGTVRPKSDVYALGVITLQLITARHARGLILAVENALQNGSFSHILDKSAGDWPLTETEELAQIALRCSALRCRDRPDLDTEVLPLLKRICDVANATVKVGRNNRIGPPSQYYCPILQEIMDDPHIAADGFSYEYRAIKAWLSKHNVSPVTKLTMQHSTLIPNHTLRSAIQEWRSGQK 778
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele17g0468 778 SUPERFAMILY RING/U-box 707 774 - -
Lele17g0468 778 SMART serkin_6 423 687 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele17g0468 778 Gene3D HUPs 21 181 IPR014729 -
Lele17g0468 778 Coils Coil 356 395 - -
Lele17g0468 778 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 708 778 IPR013083 -
Lele17g0468 778 Pfam U-box domain 709 776 IPR003613 GO:0004842|GO:0016567
Lele17g0468 778 Coils Coil 296 316 - -
Lele17g0468 778 ProSitePatterns Serine/Threonine protein kinases active-site signature. 542 554 IPR008271 GO:0004672|GO:0006468
Lele17g0468 778 CDD RING-Ubox_WDSUB1_like 712 752 - -
Lele17g0468 778 ProSiteProfiles Protein kinase domain profile. 423 687 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele17g0468 778 SMART Ubox_2 711 773 IPR003613 GO:0004842|GO:0016567
Lele17g0468 778 ProSiteProfiles U-box domain profile. 707 778 IPR003613 GO:0004842|GO:0016567
Lele17g0468 778 SUPERFAMILY Protein kinase-like (PK-like) 405 680 IPR011009 -
Lele17g0468 778 Gene3D Transferase(Phosphotransferase) domain 1 496 695 - -
Lele17g0468 778 Gene3D Phosphorylase Kinase; domain 1 401 495 - -
Lele17g0468 778 MobiDBLite consensus disorder prediction 186 207 - -
Lele17g0468 778 PANTHER OS02G0152300 PROTEIN 24 772 - -
Lele17g0468 778 FunFam Adenine nucleotide alpha hydrolase-like domain kinase 395 495 - -
Lele17g0468 778 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 21 176 - -
Lele17g0468 778 ProSitePatterns Protein kinases ATP-binding region signature. 429 450 IPR017441 GO:0005524
Lele17g0468 778 CDD STK_N 23 177 - -
Lele17g0468 778 Pfam Protein tyrosine and serine/threonine kinase 428 680 IPR001245 GO:0004672|GO:0006468
Lele17g0468 778 MobiDBLite consensus disorder prediction 186 210 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele17g0468 Lele-ChrLele17 16963944 16971182 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele17g0468 16 775 Plant U-box Gene Family AT5G57035 53.316 0.0 826
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXb Lele17g0468 PK_Tyr_Ser-Thr 1.4e-40 CL0016