Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele17g0420 ATGATTCTGGGTTCTCAACACTTTAGATTTATGCAGTACCATCTTCGCGCCATCGCACAAAACCACCATAATTTACTACAGAAAACAAACGTAGAAGAAGCAGTGGATTGGAGAAGACACTTCAATGGCTTCTTCAGCGAGCAGAGCCTCAAAATCATCCCCAGAACTTCATACTTCAAGCGCAAGCAATCGCAGAACCCATCATGGAACACCATCAATCAGCAAACATTTTGCTTGTTACTCACATTCCACAAAAGCCTCCCCAATTCTCTCCTCGACCAATCGGAAATCCCAAGGAGTAGTTATATTCAACCCTTTGGTTTCGTCATCGTCGTCGACGAGCCCACATTTCGGGTTATAGTTTACAGTGAAAACGCGCCAGATTTTCTGGGTTTTGATGCCCCACAATCAGTTCCAAATATGGAGAAGTCTGAAACTCTCAAGATTGGCTCCGACGTTCGGAATTTCTTGCCCCCATTTAGTGAGCTTCTGCTTGAGAAGGCATTTGAAGCTCAAGAACTGTCACAGAAGAACCCCATTTGGGTTCGTTCTAAGAATTCGGAGAAGCCTTTCTATGCGATTCTGCGTAGGATTGATGTCGGTGTTGTGTTTGATTTCGAGCCTGCCAGAACAGAGGATCCTGAGTTATCCATTTCTAGTTTCAGAGAACTTACCGGCTATGATAGGGTAATGGTTTATAAATTTATTGAGGAAGAACATGGTGAGGTTATTGCTGAGAGTAAGAAGCCAGACTTAGAGCCTTATGTCGGTTTGCATTATCCTTCTTTTGATGTTCCTCAGGATTTGAAGTTGTCGTTCAAGCAGAATCGAATTAGCATGATTGTAGATTGCCATGAAGCTCCTGTTCATATGATTCAAGATGAAGGTCTCAAGAAGCCTTTATGCTTGATTGAATCAGCCCTTCTTGCCCCACATGAGTGTCATGCCAAGTTCATGGCCAATATGAGATCAAATGCTTCAATGGTTATGGCAATAGTAATAAATGGGAATAATGAAGTTGTTACTAATTTTACCACAATAATAAAGTTATGGGGCCTAGTTGTTTGCCTTCACACTTCGGCTCGATTCGTCCCTTCCCCTTTGCGCTGTACATGTGAATTCCTAATTCAGGCCTTTGAGCTCAAACTAAATATGGAACTTCAAATGGAATCCGTGTTATTGGAGAAACAAGTTCTGAGGACTCAAACTATCTTGTATGATATGCTGCTTAGGGATTCTCCAACTGGTATTGTTGCTCAATCCCCAAGTATTAAGGACCTTATGAAGTGTGATGGAGCAGCTCTTTACTACCATGGGAACTACTATCCCGTAGGCGTCGCTCCGAATGAGTCCCAGGTAAAGGACATTATAGTGTGGTTGATGACCTTCCATGGAGATTCAACAGGCTTAAGTACGGATAGTCTGGCTGATGCAGGTTATCCAGGAGCTGGTTCTCTTGGTGATTCAGTTTGTGGAATGACTGTAGCTTATATCACAGAAAAAGATTTTCTATTCTGGTTCAGATCCCGTACTGCTGCGAATGAGATCGAACGGGATGAATCAATAATGAAGGATGTTGAGCATGGCAGTTCTAAGTCTACAGATGTGGATGATCTAATTTGGATGGCCAAAGAAATGGTTGGATTGATAGAAACTGCAATTGCTCCCATATTTTCTGTAGATGTTGATGGAGAAATAAGTGGGTGGAATGCTAAGGTTTCGGAATTGACTGGACTCTCAGTTGAGGAAGCTGTGGGAAAGTCTTGGGCTCATGATCTTGCGAAGGAGTCTAAAGAACTGTAG 1803 0.426 MILGSQHFRFMQYHLRAIAQNHHNLLQKTNVEEAVDWRRHFNGFFSEQSLKIIPRTSYFKRKQSQNPSWNTINQQTFCLLLTFHKSLPNSLLDQSEIPRSSYIQPFGFVIVVDEPTFRVIVYSENAPDFLGFDAPQSVPNMEKSETLKIGSDVRNFLPPFSELLLEKAFEAQELSQKNPIWVRSKNSEKPFYAILRRIDVGVVFDFEPARTEDPELSISSFRELTGYDRVMVYKFIEEEHGEVIAESKKPDLEPYVGLHYPSFDVPQDLKLSFKQNRISMIVDCHEAPVHMIQDEGLKKPLCLIESALLAPHECHAKFMANMRSNASMVMAIVINGNNEVVTNFTTIIKLWGLVVCLHTSARFVPSPLRCTCEFLIQAFELKLNMELQMESVLLEKQVLRTQTILYDMLLRDSPTGIVAQSPSIKDLMKCDGAALYYHGNYYPVGVAPNESQVKDIIVWLMTFHGDSTGLSTDSLADAGYPGAGSLGDSVCGMTVAYITEKDFLFWFRSRTAANEIERDESIMKDVEHGSSKSTDVDDLIWMAKEMVGLIETAIAPIFSVDVDGEISGWNAKVSELTGLSVEEAVGKSWAHDLAKESKEL 600
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele17g0420 600 Gene3D PAS domain 550 599 - -
Lele17g0420 600 SUPERFAMILY GAF domain-like 395 512 - -
Lele17g0420 600 Pfam PAS fold 545 596 IPR013767 GO:0006355
Lele17g0420 600 TIGRFAM sensory_box: PAS domain S-box protein 549 596 IPR000014 -
Lele17g0420 600 FunFam Phytochrome 392 525 - -
Lele17g0420 600 Gene3D - 221 392 IPR029016 -
Lele17g0420 600 Gene3D - 395 527 IPR043150 -
Lele17g0420 600 SUPERFAMILY PYP-like sensor domain (PAS domain) 549 591 IPR035965 -
Lele17g0420 600 ProSiteProfiles Phytochrome chromophore attachment site domain profile. 215 377 IPR016132 -
Lele17g0420 600 CDD PAS 553 590 IPR000014 -
Lele17g0420 600 Pfam PAS fold 93 209 IPR013654 GO:0006355
Lele17g0420 600 Pfam GAF domain 221 387 IPR003018 GO:0005515
Lele17g0420 600 SUPERFAMILY PYP-like sensor domain (PAS domain) 87 212 IPR035965 -
Lele17g0420 600 PRINTS Phytochrome signature 157 179 IPR001294 GO:0006355|GO:0009584
Lele17g0420 600 PRINTS Phytochrome signature 417 437 IPR001294 GO:0006355|GO:0009584
Lele17g0420 600 PRINTS Phytochrome signature 502 521 IPR001294 GO:0006355|GO:0009584
Lele17g0420 600 ProSiteProfiles PAS repeat profile. 542 600 IPR000014 -
Lele17g0420 600 PANTHER TWO-COMPONENT HISTIDINE KINASE 64 491 - -
Lele17g0420 600 SUPERFAMILY GAF domain-like 221 383 - -
Lele17g0420 600 Gene3D PAS domain 97 220 - -
Lele17g0420 600 Pfam Phytochrome region 400 512 IPR013515 GO:0006355|GO:0009584
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele17g0420 Lele-ChrLele17 16561668 16565183 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele17g0420 82 599 Histidine Kinase Gene Family AT2G18790 50.645 0.0 605