Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele17g0408 ATGGAGCTTCAGAGACGCCAAGATCAGGGCTTCTCTGAGAAGAAAGGACAGAAGCGTAAGCTAGAGGAGGAATTGGAAGAAGAGTCTGAGATCTCGGCTCCACCGCCCACCGGCGACGTCCGTGAGGCGTTGCTCGCCGAGGTGAAGTCTCAGGTTGACGTCCTCGACTCCACTTTCTCATGGACAGAATCCGATCGAGCCGCGGCTAAGCGCGCCACTCACGTTCTTTCTGAGCTTGCCAAGAATGAAGAAGTAGTGAACGTGATTGTTGAAGGAGGCGCAATTCCGGCTTTGGTTAAACATCTTCAAGCGCCTCCTTCGAGTGAAGACGATCCTGGTCAGAAGCCGTTTGAGCACGAGGTTGAGAAAGGGAGTGCTTTTGCTCTGGGACTTCTTGCCGTCAAGCCAGAACATCAACAACTCATTGTTGACAATGGTGCCTTAAAACATCTTGTTGATCTGTTGAAGAGGCATAATAATAGCTCTACTTCTCGTGCTGTGAATAGTGTCATTCGTAGAGCTGCAGATGCGATCACTAATCTTGCTCATGAAAACAGTAACATCAAAACCTGTGTCAGGATGGAAGGTGGGATTCCACCACTTGTTCAGTTGCTTCAATTCACTGATACAAAGGTTCAAAGAGCAGCTGCTGGTGCACTTCGTACCCTGGCTTTTAAAAATGATGAAAATAAAAATCAGATTGTCGAATGCAATGCTCTTCCAACTCTGATTCTAATGCTACGTTCTGAAGATCCTGCTATTCACTATGAAGCGGTTGGTGTGATTGGAAATCTGGTGCATTCTTCTCCTAATATAAAGAAAGAAGTTATTCTAGCTGGAGCTTTGCAACCTGTAATTGGATTGCTTCACTCTTGCTGCTCTGAGAGCCAAAGGGAAGCAGCATTGTTGCTTGGACAGTTTGCAGCTACTGATTCTGACTGCAAGGTTCATATTGTTCAGAGAGGTGCTGTTCCACCTCTGATAGAGATGCTTCAATCCAATGATGTACAACTGAAAGAAATGTCTGCCTTTGCCCTAGGGCGACTGGCACAGGACATGCATAATCAAGCTGGTATTGCACACAACGGTGGCTTAGCGCCATTACTCAAGCTTCTTGATTCAAAAAATGGGTCTTTGCAACATAATGCAGCTTTTGCACTTTATGGCCTTGCAGATAATGAGGATAATGTGTCCGATTTTATTAGGGTAGGTGGTGTTCAGAGACTGCAGGATGGAGAGTTTATTGTTCAGGCGACAAAAGATTGTGTTGCAAAGACATTGAAAAGATTAGAGGAAAAGATTCATGGCCGTGTCCTGAATCATTTGTTATATCTTATGCGAGTTTCAGAAAAGGCTGTTCAAAGACGAGTTGCTTTGGCTCTTGCTCATCTTTGTTCTGTGGAAGATCAGAGATTAATATTCATTGATAATAATGGTTTGGAGTTGCTCATTGGGCTTCTTGGCTCTTCTAGTACAAAGCAGCAACTTGATGGTGCTGTAGCTTTATGCAAGTTGGCCAAGAAAGCCATGACTCTATCTCCTGTAGATGCTGCGCCTCCATCTCCAACACCTCAGGTCTATTTGGGAGAGCAGTATGTTAACAATGCTACATTGTCCGATGTTACATTTTTGGTTGAAGGGAAGCGGTTTTATGCTCACAGAATCTGCCTACTTGCGTCTTCTGATGCATTTCGCGCAATGTTTGATGGTGGTTATAGGGAGAAGGATGCGAGGGATATAGAAATTCCAAATATAAGATGGGAGGTTTTTGAACTAATGATGAGATTCATCTATACCGGATCAGTTGATGTTGCTCTGGACATTGCTCAGGATCTTCTTCGAGCAGCTGATCAATATCTCCTAGAAGGACTTAAGAGACTCTGTGAGTACACAATTGCGCAGGATATATCACTTGAGACCGTTTCAAGTATGTATGAACTTTCAGAAGCCTTTAATGCAATATCATTGAGGCACACCTGCATCGTTTATATCCTAGAGCAGTATGATAAACTGAGTGCCAAGCCAGGGCACTCTCATCTGATTCAACGTATTATGCCAGAAATACGCAACTACTTTACAAAAGCGCTTATGAAGGCTAACTGCCCTCTTGCTTGGTCGTAG 2121 0.4422 MELQRRQDQGFSEKKGQKRKLEEELEEESEISAPPPTGDVREALLAEVKSQVDVLDSTFSWTESDRAAAKRATHVLSELAKNEEVVNVIVEGGAIPALVKHLQAPPSSEDDPGQKPFEHEVEKGSAFALGLLAVKPEHQQLIVDNGALKHLVDLLKRHNNSSTSRAVNSVIRRAADAITNLAHENSNIKTCVRMEGGIPPLVQLLQFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDPAIHYEAVGVIGNLVHSSPNIKKEVILAGALQPVIGLLHSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVPPLIEMLQSNDVQLKEMSAFALGRLAQDMHNQAGIAHNGGLAPLLKLLDSKNGSLQHNAAFALYGLADNEDNVSDFIRVGGVQRLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVSEKAVQRRVALALAHLCSVEDQRLIFIDNNGLELLIGLLGSSSTKQQLDGAVALCKLAKKAMTLSPVDAAPPSPTPQVYLGEQYVNNATLSDVTFLVEGKRFYAHRICLLASSDAFRAMFDGGYREKDARDIEIPNIRWEVFELMMRFIYTGSVDVALDIAQDLLRAADQYLLEGLKRLCEYTIAQDISLETVSSMYELSEAFNAISLRHTCIVYILEQYDKLSAKPGHSHLIQRIMPEIRNYFTKALMKANCPLAWS 706
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele17g0408 706 MobiDBLite consensus disorder prediction 1 40 - -
Lele17g0408 706 CDD BTB_POZ_ARIA_plant 526 641 - -
Lele17g0408 706 SUPERFAMILY ARM repeat 69 409 IPR016024 -
Lele17g0408 706 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 238 280 IPR000225 GO:0005515
Lele17g0408 706 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 93 147 IPR000225 GO:0005515
Lele17g0408 706 Coils Coil 11 31 - -
Lele17g0408 706 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 322 364 IPR000225 GO:0005515
Lele17g0408 706 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 363 405 IPR000225 GO:0005515
Lele17g0408 706 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 146 196 IPR000225 GO:0005515
Lele17g0408 706 SMART arm_5 466 507 IPR000225 GO:0005515
Lele17g0408 706 SMART arm_5 185 225 IPR000225 GO:0005515
Lele17g0408 706 SMART arm_5 352 392 IPR000225 GO:0005515
Lele17g0408 706 SMART arm_5 227 267 IPR000225 GO:0005515
Lele17g0408 706 SMART arm_5 135 183 IPR000225 GO:0005515
Lele17g0408 706 SMART arm_5 269 309 IPR000225 GO:0005515
Lele17g0408 706 SMART arm_5 82 134 IPR000225 GO:0005515
Lele17g0408 706 SMART arm_5 311 351 IPR000225 GO:0005515
Lele17g0408 706 Gene3D - 43 410 IPR011989 -
Lele17g0408 706 Gene3D Potassium Channel Kv1.1; Chain A 523 665 IPR011333 -
Lele17g0408 706 PANTHER ARM REPEAT PROTEIN INTERACTING WITH ABF2 1 699 IPR044282 -
Lele17g0408 706 ProSiteProfiles BTB domain profile. 539 606 IPR000210 GO:0005515
Lele17g0408 706 SMART BTB_4 539 636 IPR000210 GO:0005515
Lele17g0408 706 SUPERFAMILY ARM repeat 437 609 IPR016024 -
Lele17g0408 706 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 196 231 IPR000225 GO:0005515
Lele17g0408 706 Pfam Armadillo/beta-catenin-like repeat 227 266 IPR000225 GO:0005515
Lele17g0408 706 Pfam Armadillo/beta-catenin-like repeat 189 224 IPR000225 GO:0005515
Lele17g0408 706 Pfam Armadillo/beta-catenin-like repeat 311 350 IPR000225 GO:0005515
Lele17g0408 706 SUPERFAMILY POZ domain 531 633 IPR011333 -
Lele17g0408 706 Pfam BTB/POZ domain 532 634 IPR000210 GO:0005515
Lele17g0408 706 MobiDBLite consensus disorder prediction 1 26 - -
Lele17g0408 706 Gene3D - 411 522 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele17g0408 Lele-ChrLele17 16492939 16498960 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele17g0408 198 402 U-box Gene Family AT1G23030 29.612 6.72e-15 76.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Lele17g0408 BTB 1.1e-25 CL0033