Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele17g0388 ATGGAACCGGACATGAGATCAGCTGGCCATTCCAGGATTGCAGTGAATAACAGAAGCTCCTCGGGCTGTTTAATTGTTAGAAAGAAAGGAGATGGATTGGGTGGTGGATTTGGTTCTTCCAGCAGCTCGCGGAAGCTGTCCGAATCAAAGGTTAGGAATAGGCCCAGTGTAGCTAAGAGTGATTCAGAATCAAGTGATGAGTTGCCGATGCCTTCAAAGAGAAGGCTTGGTTCTGAGACTATTCGTGTCTGTAATGGCATGACTGCTTTTGAGCGTGGTGTAGGAGAAAGGAGCGAAATCGGTAGAAAGAGGGATAGAACGGAGCAAATAAGATTTAATGAGGATTCTGTGTTTGACAAGAATGGTTTGGAGCAGAGAGAAACAAAGAGGAATAAACTGGACGTGTTTGATTTTGATGAATATGATGATGGTTTCGATGTGCAAATGACTCAAAGGAGGAAGTCTGATGGTGATAATGGAGTTAGTTCTGGAGGAAGAAGGTTTATGGAACCAATGCATGCTGCTTCTGGTGGCATTGAGAGGGAATCTGAAACAGGGTCAGGTAGACACATTGTTTATAGTAGAAGGAATTCTTATTATGACAGGGCTAGTAGCTTGTATCTAGGAGATAATAGTAGTCAGAGCAGGTTAAAAGCAAAAAGGGGTGATGCTCAGCTACCTCTGTCTTTGCTGAAAAATAAGTTTAAATCAGATGAATCCATCCGGGTTCAGGGGAAAAATGGTGTTCTAAAGGTGATGGTTAATAATAATAAGGCGGCTGGCCCATTAGAGCACTATGGTCATCGCAAACCTATGGCAAGCAGACAGAGTTTGAGGACTGAGGCCACTGCCAAGAACCCCCGAGTCCATCCTTCATCGTACTCAGAAACAAAACTTGTTCAGAAGCCAGGTTTAGTTGCTAGGCAAGAGAAAAAACGAATAACGTCAAAAAAATCATTTTCAACTAAGCACAATAAGGGCCGTGCTTGGGATACAGAAGACAGTGACTCGTCATCAAATAAGGAGTTAGAAACTTCTAAAACTCGCAAGTCTTTGAAGAGGGCAGGTTCTGAGGATGAACAGACTCCTTTGCATGAGAAACTCCCAACTAAAATCATGAAAGAAGGGGAAGTAAGGCGGGGTAGTGGCACTGAAAAACAGAAGCTGCGAGAAAAACTAAGGGAGATGCTACTGAGTGCAGGATGGACTATAGATTATCGGCCTCGAAGGAATAGAGACTATCTGGATGCAGTTTACATTAATCCAGGGGGTACAGCCTATTGGTCCATCATCAAAGCCTATGATGCTTTGCAAAAGCAATTGAATGATGGTGATGATGAGGCCAAGCCCATGGGTGATGGTTCTTCCTTTGCTCACATCTCAGATGAGATGTTGAGTCAATTAACAAGGAAAACTCGGAAAAAGATGGAGAGAGAATTGAAGAAGAAAATCGATGGTAGTGAGAGTGATATTGAAAGAGAACCCAACCGTAAAAGATCTGCCAGGGACAAGCATGATATGAATAGCACAGATTGTGATAGCAATGAAGAGAAATTAAGCTGTTTTATAAAGCAGGGGAGTAAGCCAATGAAAAACAAGATGAAAGAAAATGCTATTGCCAGTGCTAGCTTTAAATCCCAGAAATCTACACGTCGCATACACGATGAAACTGACAATTCATTATCTGACTGTGATCCTCATTTCTCACATGGGAGGAAAAGTAGAAAACATGGAAGATGTACTTTGTTAGTTCGGAGTTCTAGCAAGGGATTGAATTCAGAATCTGGTGGTTTTGTTCCATATACTGGCAAAAGAACAGTGCTTTCCTGGTTGATTGACTCTGGGACAGTTGCTTTGAGCCAAAAGGTTCAGTATCGGAGACGGAAACGAGTAATGCTGGAGGGATCGATTGCAAGTGATGGCATTCATTGTGGCTGCTGCAGTAAAATCCTCACAATTTCCAAGTTTGAGATTCATGCAGGTAGCAAATTGCGCCAGCCATTTCAAAACATATATTTGGATTCAGGAGTTTCTCTTCTACAATGTCAAATAGATGCATGGAATAGACAAGAGGATTCTGAGAAAATTAGTTATCATTCTGTGGATATTGATGGTGATGATCCAAATGATGACACTTGCGGTATATGTGGAGATGGTGGGGCCTTAATCTGTTGTGATGGTTGTCCATCAACATTTCACCAGAGCTGCTTGAGTATTCAGATGCTTCCTCCTGGTGAATGGCATTGCCCAAATTGCACCTGCAAATTTTGTCGAATAGCCAGTGAGACTGTTAAAAAAGGAGGTGCTGCTGCATGTGCTCTACATACTTGCAACTTATGTGAGAAAAAATACCATGAATTTTGTGCTGAGAAGATGGATGCCCTTTCTCTTAACTCCAATACATCATTCTTTTCTTTCTGTGGAAAAGAGTGCAAACAGTATGGTTTGCTTTTTGAGCATTTGAAGAAGTACCTAGGTACCAAGCATGAACTAGAGGCAGGATTTTCATGGTCTCTTATTCATAGAACAGACGAAGACTCAAAGGCAGCTAGTAGAGGAATTTTTCAAAGGGTGGAATGCAACTCCAAGCTAGCTGTTGCACTGACTATCATGGATGAATGCTTTTTACCCGTTGTTGACCGGAGGAGTGGGATCAATTTAATTCATAATGTTTTATATAATAGTGGGTCAAACTTCAGTAGGTTGAATTATAATGGTTTTTACACTGCTATTTTGGAGAGGGGTGATGAAATAATTTCTGCAGCATCTATCAGGTTCCATGGGACTAGGCTAGTGGAGATGCCATTTATTGGAACTCGCCACATATATAGGCGTCAGGGCATGTGCCGCCGGCTTTTTTCTGCTATTGAATCGGTATACTTTCTGAGCTATGCAATTGCTGAACTCATGCAAACATGGACAACGAATTTTGGCTTCACACATCTTGAGGAATCACTGAGGCAAGAACTAAGGTTTTTGAATATTCTGGTGTTCCCTGGTATAAATTTGCTACAGAAGGTGCTAGTAGAGAAAGGAAATTTTGAGGAGAATACAACTGCCTCAGGTGTCGAGAAAATGGAAAATGGAGACAAAGTTGGTATTAAGCCAAAATTGGTTGATGGGTCAGATGATTCCTCAAATCAAGAAGACCCTGATGGAAGTGATAATGCTGGTTCAAATCCTGTCAATGAGATAAATGATGAATGTATTGATGCTTCTCAAGAGACGACGAAGGATCAGGTTTTATCCTACAGGACCACGTGCTCCAAATCTCATTCCGTGGATAGGCTATCTGACTCGGCTTCAGATAAATGTTTTTCTCCCTCTAGTACAAATCATGTTGCACCAGAGACTGAAAATCCTGTGAAAGATAATTTGAATTCACCTGACAAAAGTCAGGTCATTTCTCCGAATGATACTTCTATTGATGCACATCGATCAGATGCTTCAGATTGCCCTGAAAATGGTACTTTGGTTCCAGAAACTGCTCCCTCTGATCCTAATTTGACAGAAGACCTGGTTGAACCTATCTCTGACCAGGAAAGTCTCCTGCCCACTGTTGTAAATGGTCATTCATCTGAGAATGAGATGAATCCAGTGGTGGCTAACATGGTGTCATCTGGAGAGGTTGGCATGAATAATACTCATGAGGTTCATAAGGCTGTTCCTTCAGGTGGGTTACCTGAAGAAGATATTACCACACAGAGCGATGAAAATGCAGATAATTCTGATTCTATACTCAATCATGCTGATGAGAGTTCCTTGCAAATCGGTTCAGGTTTGAATAATAATAGTCATGAGGTTCATAAGGCTGTTCCTTCAGGTGGGTTATCTGAAGAAAATATTACCACAGGGAGCTATGCAGATAAGTCTGATTCTATACTCAATCATGCTGATGAGAGTTCCTTGCAAATCAGTTCAGGCTTGAATAGTGAAACTGGGTGCCTAGAGAGAAATTTACACGTAGGAACAGAAGTTGTTTCGATAAATATGCGTTCCGACGAAAATGGCATCAATAATGCATCCAATGATAGCTCTAAGACTGATCAAGAGTAA 4056 0.4149 MEPDMRSAGHSRIAVNNRSSSGCLIVRKKGDGLGGGFGSSSSSRKLSESKVRNRPSVAKSDSESSDELPMPSKRRLGSETIRVCNGMTAFERGVGERSEIGRKRDRTEQIRFNEDSVFDKNGLEQRETKRNKLDVFDFDEYDDGFDVQMTQRRKSDGDNGVSSGGRRFMEPMHAASGGIERESETGSGRHIVYSRRNSYYDRASSLYLGDNSSQSRLKAKRGDAQLPLSLLKNKFKSDESIRVQGKNGVLKVMVNNNKAAGPLEHYGHRKPMASRQSLRTEATAKNPRVHPSSYSETKLVQKPGLVARQEKKRITSKKSFSTKHNKGRAWDTEDSDSSSNKELETSKTRKSLKRAGSEDEQTPLHEKLPTKIMKEGEVRRGSGTEKQKLREKLREMLLSAGWTIDYRPRRNRDYLDAVYINPGGTAYWSIIKAYDALQKQLNDGDDEAKPMGDGSSFAHISDEMLSQLTRKTRKKMERELKKKIDGSESDIEREPNRKRSARDKHDMNSTDCDSNEEKLSCFIKQGSKPMKNKMKENAIASASFKSQKSTRRIHDETDNSLSDCDPHFSHGRKSRKHGRCTLLVRSSSKGLNSESGGFVPYTGKRTVLSWLIDSGTVALSQKVQYRRRKRVMLEGSIASDGIHCGCCSKILTISKFEIHAGSKLRQPFQNIYLDSGVSLLQCQIDAWNRQEDSEKISYHSVDIDGDDPNDDTCGICGDGGALICCDGCPSTFHQSCLSIQMLPPGEWHCPNCTCKFCRIASETVKKGGAAACALHTCNLCEKKYHEFCAEKMDALSLNSNTSFFSFCGKECKQYGLLFEHLKKYLGTKHELEAGFSWSLIHRTDEDSKAASRGIFQRVECNSKLAVALTIMDECFLPVVDRRSGINLIHNVLYNSGSNFSRLNYNGFYTAILERGDEIISAASIRFHGTRLVEMPFIGTRHIYRRQGMCRRLFSAIESVYFLSYAIAELMQTWTTNFGFTHLEESLRQELRFLNILVFPGINLLQKVLVEKGNFEENTTASGVEKMENGDKVGIKPKLVDGSDDSSNQEDPDGSDNAGSNPVNEINDECIDASQETTKDQVLSYRTTCSKSHSVDRLSDSASDKCFSPSSTNHVAPETENPVKDNLNSPDKSQVISPNDTSIDAHRSDASDCPENGTLVPETAPSDPNLTEDLVEPISDQESLLPTVVNGHSSENEMNPVVANMVSSGEVGMNNTHEVHKAVPSGGLPEEDITTQSDENADNSDSILNHADESSLQIGSGLNNNSHEVHKAVPSGGLSEENITTGSYADKSDSILNHADESSLQISSGLNSETGCLERNLHVGTEVVSINMRSDENGINNASNDSSKTDQE 1351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele17g0388 1351 CDD PHD2_CHD_II 713 752 - -
Lele17g0388 1351 PANTHER PHD FINGER PROTEIN 12 350 1136 IPR042163 GO:0003714|GO:0045892
Lele17g0388 1351 SUPERFAMILY FYVE/PHD zinc finger 702 759 IPR011011 -
Lele17g0388 1351 ProSiteProfiles Zinc finger PHD-type profile. 710 755 IPR019787 -
Lele17g0388 1351 Pfam Tify domain binding domain 635 685 IPR032308 -
Lele17g0388 1351 MobiDBLite consensus disorder prediction 1222 1246 - -
Lele17g0388 1351 MobiDBLite consensus disorder prediction 1020 1064 - -
Lele17g0388 1351 MobiDBLite consensus disorder prediction 469 514 - -
Lele17g0388 1351 Pfam PHD-finger 713 755 IPR019787 -
Lele17g0388 1351 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 701 812 IPR013083 -
Lele17g0388 1351 MobiDBLite consensus disorder prediction 1331 1351 - -
Lele17g0388 1351 MobiDBLite consensus disorder prediction 261 387 - -
Lele17g0388 1351 MobiDBLite consensus disorder prediction 324 387 - -
Lele17g0388 1351 MobiDBLite consensus disorder prediction 1028 1044 - -
Lele17g0388 1351 MobiDBLite consensus disorder prediction 47 73 - -
Lele17g0388 1351 MobiDBLite consensus disorder prediction 1 80 - -
Lele17g0388 1351 MobiDBLite consensus disorder prediction 1229 1246 - -
Lele17g0388 1351 MobiDBLite consensus disorder prediction 150 169 - -
Lele17g0388 1351 MobiDBLite consensus disorder prediction 1088 1168 - -
Lele17g0388 1351 ProSitePatterns Zinc finger PHD-type signature. 713 752 IPR019786 -
Lele17g0388 1351 MobiDBLite consensus disorder prediction 469 513 - -
Lele17g0388 1351 MobiDBLite consensus disorder prediction 276 299 - -
Lele17g0388 1351 MobiDBLite consensus disorder prediction 1088 1143 - -
Lele17g0388 1351 SMART PHD_3 754 812 IPR001965 -
Lele17g0388 1351 SMART PHD_3 712 753 IPR001965 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele17g0388 Lele-ChrLele17 16316129 16322642 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele17g0388 6 1055 PHD Transcription Factor Family AT4G14920 47.664 0.0 871
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Lele17g0388 TDBD 6.3e-20 No_clan