Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele17g0387 ATGGAACCGGGCATGAGATCAGCTGGTCCTTCTGGGGTTTTGGTGAAAAGCAGGAACTCCTCGGGCTGTTTAATTGTTAGAAAGAAAGGAGATTCTAGGTTGGGTGGTGGATATGGTTCTTCAAGCAGTTCTCGGAAGTTGTATGAGTCAATGGTTAGGAAAAGGCCTAGTATGGCTCTGAGTGATTCAGAATCAAGCGATGATGAGTTGCCGATGCCTCCAAGTAGACGGCTTGGTCCTGAGACTATTCGAGCCTGTAATGGATTTACTGCTTCAGAGCGAGGTATAAAGGAAGGCAATGAAATTGGTAGAAAGAGGGATAGAATGATGCAAATCAGGCATAAGGAGGATGCTATGATTGAGAAGAATGGGTTGGAGCAGAGAGAAAGAAAGAAGACTAAAATGGAAGCTTTTGATTTTGATGAACATGATGGAATGGATGTGGAAAAGATGAAAAGGAGGTTTCTTTATGACAATGATGGAGTCGGTTTTGGGGGACGGAGGTTTATGGGACCAATGCATGGCGCGAGAAGTGGCTTTGAGAGTAAATTTGAAATAGGGTCTAGCAGACACACTCTTGATAATAGAAACAACTCCTATTATGACAGGCATAGTGGATTGTATCTGGGGGATACTGTTGATCCCAGCAGGTTCAATGTGAATAGGGATGATGCTCCCCCACGTCTACCCTTGCTGAAAGATAAGTTTAAATCAAGTGAGACCATCAGGGTTCAGGGGAAAAATGGTGTTTTAAAGGTTATGGTCAATAGGAATAAGGTGGGAGGCCCATCATCAGAGTACTATAATCACCACAAACCTATAGAAAACAGACAGAACTTGCAGACTGATGCCCCTATGAAGAGGAACATTCCAGTCCATTCTTCATCATACTCGGAAATAAAACTCATTGAGAAGCCAGGTTTAGCTGTTAGGCCCGAGGGAAAACGAATAGCATCAATAAAATCTTTGTCAATTAAGGAAAGCAAGGGACATGATTTGGACTCTGAGGACAGTGACACACCATTGAATCAAGGACTAGAAAATACTAAACCCTTCAAGTCTATGAAGAGAGTAGGTTCTGAGGATGAAAAGACTCCTTTACGTGAGAAGCTCCCAACTACAATAATAAAAGAAGGAAAGGAAGGACAAGTAAGGCGTGGGAGTGGTACAGAAAAACAGAAACTGCGAGAAAAAATAAGGGAGATGCTGCTGAGTTCAGGTTGGACTATAGATTATCGGCCTAGAAGGAACAGAGACTATCTAGATGCAGTTTACATCAATCCTGGGGGTACAGCCTACTGGTCAATAATCAAAGCATATGATGCTCTTCAAAAGCAATTGAATGGTGATGATAGTGAGGCCAAGCCCATGGGTGATGGTTCTTCCTTTGCTCGTATCTCAGATGAAGTGCTGAGTCAATTAACAAGGAAAACTCGGAAAAAGATGGAAAAAGAGTTGAAGAAGAAGCAAAGAGATGGTAGTGAGAGTGATAGTGAAATGGAACCCAACCTTAAAACATCTGCCAATTTCAGGCATGATGTGAATAGCATAGATAGTGATAGCAATGAAGAGAAGTTAAGCTCTTTTATAAAGCAGGGAAGTAATTCAACCAAAAATAAGATGATTGAAAATGTTGCCAGTGTTAGCTTTAAATCCCAGAAATCAACCCTTCACTTACATGATGGAACTGAAAATTCGTTGTTTGGGTGTGATCCTCATCAGCCACATGGGAGGAAAAGTAGAAAACATGGAAGATGCACTTTGTTAATCCGTGGTTCTAATAAGGGAGCGAATTCAGAATCTGATGGCTTTGTTCCATATACAGGCAAAAGAACGGTGCTTTCCTGGTTGATTGACTCTGGAACAGTTCAGCTGAGCCAAAAGGTTCAGTACCGCAAAAGAAAACGAGTGATGCTGGAGGGATGGATCACAAGAGATGGCATTCATTGTGGATGTTGCAGCAAAATCCTTACGGTTTCCAAGTTTGAGATTCATGCAGGTAGCAAATTGCGCCAGCCATTTCAAAACATATATTTGGATTCGGGAGTATCACTTCTACAGTGCCAAATAGATGCATGGTGGAGACAGGAGAATTCAGACAAAATTAGTTTTCATTCTGTTGATGTTGATGGCAATGATCCAAATGATGACACTTGTGGTATATGTGGAGATGGAGGGGATTTACTCTGTTGTGATGGTTGCCCATCAACATTTCATCAGAGCTGCTTGAATATACAGATGCTTCCTCCTGGTGAGTGGCATTGTCCAAAGTGCACCTGCAAATTTTGTGGAATAGCCAGTGGGACTGTTAAAAAAGGAGATGCTGCTGCTGTATATGCTCTGGTCACTTGCAACTTATGTGAGAAAAAATACCATGAATCTTGCACTATGGAGATGGATGCTGCTTCTATTGAGTCCAATATGCCAGGCTTTAATTTTTGTGGAAAAGAGTGCAAAGAGCTTTTTGAGGGCTTGAAGAAGTACCTTGGTACCAAGCATGAGCTAGAAGCATGCTTTTCATGGTCTCTTATTCATAGAGCAGATGAAGACTCAGAGGCAGCTGGTAGAGGAATTCTTCAAAGGGTGGAATGCAATTCCAAGCTAGCCGTTGCACTGACTGTGATGGATGAATGCTTTTTACCCATTGTTGACCGGAGGAGTGGCATCAATATAATTCATAATGTTCTATATAATAGTGGATCAAACTTCAGTAGGTTGAATTATAGTGGCTTTTACACGGCCATTTTGGAGAGGGGCGATGAGATAGTTTCGGCAGCATCTATCAGGTTCCATGGGATTAAGTTGGTGGAGATGCCATTTATTGGAACTCGCCATATATACAGGCACCAGGGGATGTGCCGCCGGCTTTTTTCTGCCATTGAATCGGCCCTCTGCTCTATGAAGGTTGAGAAAATGGTTATTCCAGCCATTTCTGAACTCACACAAACATGGACAGAAATTTTTGGCTTCACTCCTCTTGAAGAATTACTCAGGCAAGAAATGAGATCATTGAACATGCTTGTCTTCCCTGGTATAGATATGCTTCAGAAGTTGCTTGTGGAGCAAGGAAACTTTGAAGGGAACACAACTTCCACAGGTGCTGATAAAATGGACCCTGGAGACACGGCTTATACTAAGCCAAAATTGGCTAATTCCTCATCTCATTTGGATACTGATGGAACTGATGATGCCGGTTTAGATCCTCTTAATAATGAGATAAAAGATGAAAGTAGTGATGCTTCTTTAGATAAAATCAATCAAGTTTTGTCTGACAAGATTGTACGTTCCAAATCCTGTTCTGAGGATAGGCTGTCTGACTCATCTTCAGATGGATGTTCTTCACCCTCTAGTACCAGTCATGATGTTCTGGAGATGGAAAATAAAGTGTTGGCTTCTCCATCGATGAAAGATAATTTGCGTATGTCTACCGACTGTCAGGGCAATTCTCTGAATGAAACTTTTATTGATATACATCCGTCAGATGCTCTGGATGGCCATGAAAATCGCACTTTGGTTCAGAGAGCTGCTACTTCTGATCCTAATTCGACAAAAAAACCAGTTGAACCAGTTTCTGACTGGGAAGGTCATTTGCCTTCTGCTATAAATGGTGTTTCATCTGAGCTTGAGATGAACCTGGTGTTGGATTCTCAAATGATGGATAATACTACCTCTTTTAGGGAGGTTGACATGAATAATTTTCAAGAGGTTGATGAAGCTGTTCCCTCAGGGAGTTTGTCCGAAGATGGTGTTACCAACAATAACATTGAGAATATAGATGTGTCTGATTCTGATCTCAATCATGCAGACAATAATGAAACTGAGTATGAAGGGGAAAGAAATTTATATATGGACACCGAAGTCGCTTCGAAAGAAATGCAATTTTATGGAAGTGGCATTAATGCATCATCCAGTGATAGTTCTGAGACTGATTCGGAGTAA 3939 0.4153 MEPGMRSAGPSGVLVKSRNSSGCLIVRKKGDSRLGGGYGSSSSSRKLYESMVRKRPSMALSDSESSDDELPMPPSRRLGPETIRACNGFTASERGIKEGNEIGRKRDRMMQIRHKEDAMIEKNGLEQRERKKTKMEAFDFDEHDGMDVEKMKRRFLYDNDGVGFGGRRFMGPMHGARSGFESKFEIGSSRHTLDNRNNSYYDRHSGLYLGDTVDPSRFNVNRDDAPPRLPLLKDKFKSSETIRVQGKNGVLKVMVNRNKVGGPSSEYYNHHKPIENRQNLQTDAPMKRNIPVHSSSYSEIKLIEKPGLAVRPEGKRIASIKSLSIKESKGHDLDSEDSDTPLNQGLENTKPFKSMKRVGSEDEKTPLREKLPTTIIKEGKEGQVRRGSGTEKQKLREKIREMLLSSGWTIDYRPRRNRDYLDAVYINPGGTAYWSIIKAYDALQKQLNGDDSEAKPMGDGSSFARISDEVLSQLTRKTRKKMEKELKKKQRDGSESDSEMEPNLKTSANFRHDVNSIDSDSNEEKLSSFIKQGSNSTKNKMIENVASVSFKSQKSTLHLHDGTENSLFGCDPHQPHGRKSRKHGRCTLLIRGSNKGANSESDGFVPYTGKRTVLSWLIDSGTVQLSQKVQYRKRKRVMLEGWITRDGIHCGCCSKILTVSKFEIHAGSKLRQPFQNIYLDSGVSLLQCQIDAWWRQENSDKISFHSVDVDGNDPNDDTCGICGDGGDLLCCDGCPSTFHQSCLNIQMLPPGEWHCPKCTCKFCGIASGTVKKGDAAAVYALVTCNLCEKKYHESCTMEMDAASIESNMPGFNFCGKECKELFEGLKKYLGTKHELEACFSWSLIHRADEDSEAAGRGILQRVECNSKLAVALTVMDECFLPIVDRRSGINIIHNVLYNSGSNFSRLNYSGFYTAILERGDEIVSAASIRFHGIKLVEMPFIGTRHIYRHQGMCRRLFSAIESALCSMKVEKMVIPAISELTQTWTEIFGFTPLEELLRQEMRSLNMLVFPGIDMLQKLLVEQGNFEGNTTSTGADKMDPGDTAYTKPKLANSSSHLDTDGTDDAGLDPLNNEIKDESSDASLDKINQVLSDKIVRSKSCSEDRLSDSSSDGCSSPSSTSHDVLEMENKVLASPSMKDNLRMSTDCQGNSLNETFIDIHPSDALDGHENRTLVQRAATSDPNSTKKPVEPVSDWEGHLPSAINGVSSELEMNLVLDSQMMDNTTSFREVDMNNFQEVDEAVPSGSLSEDGVTNNNIENIDVSDSDLNHADNNETEYEGERNLYMDTEVASKEMQFYGSGINASSSDSSETDSE 1312
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele17g0387 1312 PANTHER PHD FINGER PROTEIN 12 377 1141 IPR042163 GO:0003714|GO:0045892
Lele17g0387 1312 MobiDBLite consensus disorder prediction 1105 1123 - -
Lele17g0387 1312 SMART PHD_3 760 819 IPR001965 -
Lele17g0387 1312 SMART PHD_3 718 759 IPR001965 -
Lele17g0387 1312 Coils Coil 472 492 - -
Lele17g0387 1312 ProSitePatterns Zinc finger PHD-type signature. 719 758 IPR019786 -
Lele17g0387 1312 MobiDBLite consensus disorder prediction 1096 1123 - -
Lele17g0387 1312 CDD PHD2_CHD_II 719 758 - -
Lele17g0387 1312 MobiDBLite consensus disorder prediction 1029 1078 - -
Lele17g0387 1312 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 707 808 IPR013083 -
Lele17g0387 1312 ProSiteProfiles Zinc finger PHD-type profile. 716 761 IPR019787 -
Lele17g0387 1312 MobiDBLite consensus disorder prediction 1 81 - -
Lele17g0387 1312 MobiDBLite consensus disorder prediction 474 508 - -
Lele17g0387 1312 Pfam Tify domain binding domain 641 691 IPR032308 -
Lele17g0387 1312 MobiDBLite consensus disorder prediction 325 366 - -
Lele17g0387 1312 Pfam PHD-finger 719 761 IPR019787 -
Lele17g0387 1312 MobiDBLite consensus disorder prediction 474 499 - -
Lele17g0387 1312 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 906 996 IPR016181 -
Lele17g0387 1312 MobiDBLite consensus disorder prediction 1174 1196 - -
Lele17g0387 1312 SUPERFAMILY FYVE/PHD zinc finger 708 764 IPR011011 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele17g0387 Lele-ChrLele17 16307669 16313880 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele17g0387 1 1058 PHD Transcription Factor Family AT4G14920 49.164 0.0 905
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Lele17g0387 TDBD 1.1e-21 No_clan