Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele17g0386 ATGTTCGTGGATTTTCAGCACATTCTTCGTGTTCTGAGCACAAATGTTGATGGTAAGCAGAGGATCATGTTCGCCTTTATCTCCATCAAAGGTATTGGTCGTCTCTTCGCCAAAATCGTCTGCAAGAAAGCCGTCGTCGATATGAACCAAAGTCCATTTTACATTCTGTTCAGTGGTTCGATGCTCGCAAGAAATGGTATTTCCTTTATTTCACGGTATAATCCACATCTCTTGAGGAAACTCAGTTTTTGCTTTGAGGCCTACCAGAAAATTCCCAATAAGGAGGAGGATGAAGCTATAACTGATTCCGTACTAGTTTCTGATTTTTCTAGTAGCCTTCATAATCTCTCCCCACTGTTATCTGATGCTAAATTTCCTTCAAATGGTTACAATATTGAGCTTGTGGATCACGATGCTTGGCGGGTCTCATCAGGACTATCACAAGCTTGGCAAAGGATAGGACGGGGTTCACTAGAAACAAGTTCTACAGGTAAGGAAGAAACTAATGAACTCATTGATTTCGATTCCTCAAATGTTGATGACGAAGTTGATTTTGAAGACATTGATAATATGAGAATCCGTGGGAATCTGTTCTACAAACTTGAAAAGAGTTCTAAAGAGTTTGAAGAATATAATCTAGAGTTTCACAGGAGGAAGAAATCTCCAGAGAAAGGAGATGATAAAAAGGAAAATTCTAAGAAGGAAAAGAAAGCTAGCCAAAGTCCTAAAACTTCCAAAGTTCAAGAAGTCCAAAGAACTAAAAGTGTTAATAATATACCTCAGCTTCGTGAAGCTAATGTAACTTCTCTGGAGAACAAGAAGCAGAGGACTCTTACTTTTAACCAGCTTACGGGTCCATATCATGAGCCATTTTGCTTGGATATATTCATATCAAAAGCCTCTGTTCGTGCGTGTGTTGTTCATAGGGTAACAAGCAAGGTTGTTGCTGTGGCTCATTCTATTTCAAAGGATATAAAGTTTGACTTCACTTCCACTAAGAACAAAAACACTTGTGCTGCTGTAGGGGCATTACTAGCTCAAAGATCATTGGCTGATGATATTCATGATGTGATCTATACACCAAGGAAAGGAGAGAGGTTGGAGGGAAAGCTTCATATTGTTCTTCAGTCTATCATTGATAATGGCATTCATGTGAAGGTGAAAATTAAACAAAGAAAGCCTAATAAGAAGGCTTTTCAATCGCCTCAGAAGTATTGA 1218 0.3875 MFVDFQHILRVLSTNVDGKQRIMFAFISIKGIGRLFAKIVCKKAVVDMNQSPFYILFSGSMLARNGISFISRYNPHLLRKLSFCFEAYQKIPNKEEDEAITDSVLVSDFSSSLHNLSPLLSDAKFPSNGYNIELVDHDAWRVSSGLSQAWQRIGRGSLETSSTGKEETNELIDFDSSNVDDEVDFEDIDNMRIRGNLFYKLEKSSKEFEEYNLEFHRRKKSPEKGDDKKENSKKEKKASQSPKTSKVQEVQRTKSVNNIPQLREANVTSLENKKQRTLTFNQLTGPYHEPFCLDIFISKASVRACVVHRVTSKVVAVAHSISKDIKFDFTSTKNKNTCAAVGALLAQRSLADDIHDVIYTPRKGERLEGKLHIVLQSIIDNGIHVKVKIKQRKPNKKAFQSPQKY 405
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele17g0386 405 Pfam Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast 291 384 IPR005484 GO:0003735|GO:0005840|GO:0006412
Lele17g0386 405 MobiDBLite consensus disorder prediction 217 270 - -
Lele17g0386 405 Pfam Ribosomal protein S13/S18 10 50 IPR001892 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Lele17g0386 405 SUPERFAMILY Translational machinery components 281 383 - -
Lele17g0386 405 SUPERFAMILY S13-like H2TH domain 9 50 IPR010979 GO:0003676
Lele17g0386 405 MobiDBLite consensus disorder prediction 217 242 - -
Lele17g0386 405 Gene3D - 3 52 - -
Lele17g0386 405 PANTHER 39S RIBOSOMAL PROTEIN L18, MITOCHONDRIAL 191 385 IPR005484 GO:0003735|GO:0005840|GO:0006412
Lele17g0386 405 Gene3D - 268 384 - -
Lele17g0386 405 CDD Ribosomal_L18_L5e 287 383 - -
Lele17g0386 405 ProSiteProfiles Ribosomal protein S13 family profile. 11 49 IPR001892 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Lele17g0386 405 MobiDBLite consensus disorder prediction 243 270 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele17g0386 Lele-ChrLele17 16302912 16305286 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele17g0386 4 50 Cytoplasmic Ribosomal Protein Gene Family AT4G09800 78.723 1.88e-18 80.1