Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lele17g0262 | ATGATGGAGGCAGATTCTTTGTCCGAGTCGATCAAGAAGGTTCAGTCACGATTCGATTTCGAGGTTCCTGAACCGGCTGTTCGTCTAGCTCTGACGGAATCTCTGTTCGACGTGGATGCTGCTGTGGAGTTTCTCAACAACAATCCAGGGTTTCTGGCCCGACCCGTCACTGTTGTTCGGGCCGTTACTAGCACTGGTTCTCGGATTCTGGCACCGACGCCGGTAAAGCAAGAGGGGTACGATGAATCGCAAATGTTCGATGAAATGAGTCTGAAGAGCAAGGTGAAAGAGGAACCCGTTGATTTGGCGCTTGAGAATCAAGCCCAAAATCCAGCGAAAGCAGAAAATGGTTCCGATGATTCTCATGAAGGTGCAAAACCGCTCGAGGAGTTGAATGTGAAGAAAGAAGCGAATGAAGAAATCAACGTCGAACCCGAGAAGCTGCTTTCTGTGCATGTTGAAATGGATGTTGATGTTTCTAGTTCAGTGCCATCCCAAACCCAGATTCAAGAGTCTACTGCTATTCAGAAATCTTCATGGGAAGCTGGATATGAAGAGTTCCTTAAGGCTTCTGATGCAAAAGTTATATCAAAGGAAGACTATTTAAAGTCTATTGGGGAACAACAGCAACAACCATCACCATCAGTTCAGGCTGAAGCTTGTAAAGCAAAGCAGGATACGAAGAAGGTCTTTGACAAGAAAGAAGTCTCTACCTGTGATAGAGGTGAAGTAAAAATCATCAAAGAAGTTGGTTTCTTTCCATGTTTTCGGAAATCATCTTCGCAGGTAAAAACTAAGGTTGTAGAGAAGATTGAACCTAGACCTCCAAACGTGGAGGATGGGGACTTTCCAGTAGAACCAGACTGGTTTTTAGTGGGAAGGACAATAGTCACTGCAATTTCAACTACCAAAGGGAAGAAACTAGTGGACAATGAGATTGTAAACTTTGATTTCCAATCTGTATTTGCGAAACACAAATCAAGATGGATTCTTCGCATTTCAACCAAGCGTTCTGGGGAGGTTGGATGGGTTAATAGGGAATGGGCTGAAAAGGTTGTTCCACTTATTCGTTCTGCAAAGGTCAAGGTTAGAGGTCGATGCATAGCTGCACCACCTGTCTTACAAATGATGCAAGAAGTCATGTTGTGTGTTAGCTTTTACATTCATCACACTGCATTCACTTCTGAAGTCAATACTTCATGGAGGCTTGATGGATCTTCTTACATTGAACCTTCTGTTTATCCTCTTCCCCGAGTGTTCAAATTGATAGACATGAAGCCTTATCAGAATGCTGCTTTTACCCCAGGGGAACTTGATTCTAGGAAACGTTTGTTCAGTAGCACGGGTAATACGGATGAAGCTGCTTCAGATTTACCTGGCTTGAAACGGAGAAAGGGCTGTCCTCCAGATCAAGATGATGAACAAGCGGTGTCACAGTCATCATTGAATAAGCTTGTTGGAGCAGCTGAAGTCTACGACTTGGAGGAGATGGAAGGGCCAAGCACACTGATGTGTGATCTAAAGCCTTACCAGAAACAAGCACTGCATTGGATGTCAGAACTTGAGAAAGGAACTAATGCTAAGAATGCTGAAAGTACTCTTCATCCTTGCTGGGCAGCCTATTGTATTGATGATGAGAGAGTTCCCACTGTTTACGTAAACAACTTCACAGGGGAAGCAACAACTAAGCTCCCGCCTGCATTTCGTTTGCCAAGAGGAGGAATTCTCGCAGATGCTATGGGACTTGGGAAGACTGTCATGACTATTGCTCTAATTCTTGCAAGACAAGGGAGAGGAGATGATTGTGGTCATTCAAGAAAGAGGAACCAAGTTTCTCGTACTGACCCCACATTCAAAGTTGATGGCGGCACTCTTGTTGTTTGTCCCATGGCATTGCTAGGTCAATGGAAGGACGAGCTTGAAACCCATTCCAAGCCAAGAAGTTTATCTATTTTTGTTCACTACGGCGGGGATAGAACTAATGATCCTCGGGTGATCTCAGGGCATGATGTCGTTTTAACAACATATCGTGTCCTAGGAGATGCATATAAAACTTATCGAGAAAACAGCATTTACCATAAGGTCAACTGGCATAGGGTGGTCCTAGACGAAGCTCATTCCATTAAAGCCTATAAATCACATGCTGCACAAGCTGCTTTTACGCTGACCTCACACTGCCGTTGGTGTCTTACCGGAACCCCTCTACAGAATAGCTTGGAAGACCTATTCAGCCTCTTGTGCTTCTTGCATGTTGAACCATGGGGCAATTTTGCGTGGTTTAATAAATTGGTTCAACGGCCTTATGAGAATGGTGATCCTCGAGGCTTGAAATTAATCAAGGCCATTTTGCAGCCATTGATGTTAAGAAGAACAAAGGAAACAAAGGATAAATGTGGAAGGCCCATACTTATTCTTCCACCAACTGACATCCAATTAGTTGAGTGTGAACAGTCAGCAGCTGAAGCTGAATTGTATAATGCCCTCTTCAGGAAATCTAAACATCAATTCGATGAGTATGTTGGGCAAGGAAAAGTTCTCAGCAACTATGCCAATATTCTCGAGTTATTATTGCGGTTGAGACAATGTTGTAACCATCCGTTTCTGGTCACAAGCCGAAGTGACTCGAAGAAACCTGTGGACTTTGACATACTCGCGAAAAGACTACTCGAGTTCAACTGTAATTCTACAAGTCAGAGTGCATATGTTACAGAGGCCATAGAGGCTCTTCGCAGGGGTGAAAAGCTAGAATGTCCAATATGCTTAGAATCTGCAGATGATCCTGTCTTCACTCCATGTGCACACAGAATGTGTAGGGAATGCTTACTTTCCAGCTGGAGTGACCAAATCAGTGGTCCTTGTCCTCTCTGTCGTCTCAAACTGAACAAAACTGATCTAATCAATTGTCCTTTTGAGAACCAGTTCGTGGTTACTGATGTTGAGAAGGAATGGAAGGAATCTACCAAGGTTTCAAAGCTTTTGGAACACTTGGAACGAATTCAGCGATATCGCCCTGCTGAAAAAAGCATTGTGTTCAGCCAGTGGACTTGCTTTTTGGACCTCCTGGAGATTGCTTTGAAGAAGAAAGGAATTGGCTATTTTAGATTTGATGGGAAACTGCAACAAAAGAACAGGGAAAAAGTTTTGAAGGAGTTTAATGAGTCAAGAGAGGAAAGGGTTTTGTTGATGTCACTTAAAGCTGGTGGTGTAGGCTTGAACTTGACTGCAGCCTCAAATGTTTTCATGATGGATCCATGGTGGAATCCTGCCGTTGAAGAGCAGGCAATTATGAGAATCCATCGCATAGGACAAAAGCGAACAGTTATGGTCAGAAGATTCATTGTCAAGGATACGGTCGAAGAGAGGCTGCAACAAGTGCAAGCGAAGAAGCAGAAGATGATATCTGGAGCCCTCACAGAAGATGAGGTTAGGTCAGGTAGGATTGAAGACCTCATGATGCTGTTCAGTTGA | 3468 | 0.4377 | MMEADSLSESIKKVQSRFDFEVPEPAVRLALTESLFDVDAAVEFLNNNPGFLARPVTVVRAVTSTGSRILAPTPVKQEGYDESQMFDEMSLKSKVKEEPVDLALENQAQNPAKAENGSDDSHEGAKPLEELNVKKEANEEINVEPEKLLSVHVEMDVDVSSSVPSQTQIQESTAIQKSSWEAGYEEFLKASDAKVISKEDYLKSIGEQQQQPSPSVQAEACKAKQDTKKVFDKKEVSTCDRGEVKIIKEVGFFPCFRKSSSQVKTKVVEKIEPRPPNVEDGDFPVEPDWFLVGRTIVTAISTTKGKKLVDNEIVNFDFQSVFAKHKSRWILRISTKRSGEVGWVNREWAEKVVPLIRSAKVKVRGRCIAAPPVLQMMQEVMLCVSFYIHHTAFTSEVNTSWRLDGSSYIEPSVYPLPRVFKLIDMKPYQNAAFTPGELDSRKRLFSSTGNTDEAASDLPGLKRRKGCPPDQDDEQAVSQSSLNKLVGAAEVYDLEEMEGPSTLMCDLKPYQKQALHWMSELEKGTNAKNAESTLHPCWAAYCIDDERVPTVYVNNFTGEATTKLPPAFRLPRGGILADAMGLGKTVMTIALILARQGRGDDCGHSRKRNQVSRTDPTFKVDGGTLVVCPMALLGQWKDELETHSKPRSLSIFVHYGGDRTNDPRVISGHDVVLTTYRVLGDAYKTYRENSIYHKVNWHRVVLDEAHSIKAYKSHAAQAAFTLTSHCRWCLTGTPLQNSLEDLFSLLCFLHVEPWGNFAWFNKLVQRPYENGDPRGLKLIKAILQPLMLRRTKETKDKCGRPILILPPTDIQLVECEQSAAEAELYNALFRKSKHQFDEYVGQGKVLSNYANILELLLRLRQCCNHPFLVTSRSDSKKPVDFDILAKRLLEFNCNSTSQSAYVTEAIEALRRGEKLECPICLESADDPVFTPCAHRMCRECLLSSWSDQISGPCPLCRLKLNKTDLINCPFENQFVVTDVEKEWKESTKVSKLLEHLERIQRYRPAEKSIVFSQWTCFLDLLEIALKKKGIGYFRFDGKLQQKNREKVLKEFNESREERVLLMSLKAGGVGLNLTAASNVFMMDPWWNPAVEEQAIMRIHRIGQKRTVMVRRFIVKDTVEERLQQVQAKKQKMISGALTEDEVRSGRIEDLMMLFS | 1155 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lele17g0262 | 1155 | CDD | SF2_C_SNF | 982 | 1113 | - | - | |
Lele17g0262 | 1155 | Gene3D | - | 562 | 791 | IPR038718 | - | |
Lele17g0262 | 1155 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 803 | 1147 | IPR027417 | - | |
Lele17g0262 | 1155 | SMART | ring_2 | 917 | 956 | IPR001841 | - | |
Lele17g0262 | 1155 | ProSitePatterns | Zinc finger RING-type signature. | 932 | 941 | IPR017907 | - | |
Lele17g0262 | 1155 | SMART | helicmild6 | 1019 | 1102 | IPR001650 | - | |
Lele17g0262 | 1155 | Pfam | Helicase conserved C-terminal domain | 990 | 1102 | IPR001650 | - | |
Lele17g0262 | 1155 | ProSiteProfiles | Superfamilies 1 and 2 helicase C-terminal domain profile. | 991 | 1151 | IPR001650 | - | |
Lele17g0262 | 1155 | Pfam | Zinc finger, C3HC4 type (RING finger) | 917 | 956 | IPR018957 | GO:0046872 | |
Lele17g0262 | 1155 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 910 | 966 | IPR013083 | - | |
Lele17g0262 | 1155 | SMART | ultradead3 | 503 | 765 | IPR014001 | - | |
Lele17g0262 | 1155 | PANTHER | TRANSCRIPTION TERMINATION FACTOR 2-RELATED | 282 | 1154 | - | - | |
Lele17g0262 | 1155 | ProSiteProfiles | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 565 | 752 | IPR014001 | - | |
Lele17g0262 | 1155 | CDD | DEXDc_SHPRH-like | 507 | 790 | - | - | |
Lele17g0262 | 1155 | CDD | RING-HC | 917 | 956 | - | - | |
Lele17g0262 | 1155 | ProSiteProfiles | Zinc finger RING-type profile. | 917 | 957 | IPR001841 | - | |
Lele17g0262 | 1155 | MobiDBLite | consensus disorder prediction | 457 | 471 | - | - | |
Lele17g0262 | 1155 | SUPERFAMILY | RING/U-box | 912 | 966 | - | - | |
Lele17g0262 | 1155 | Pfam | SNF2-related domain | 510 | 868 | IPR000330 | GO:0005524|GO:0140658 | |
Lele17g0262 | 1155 | Gene3D | - | 806 | 1154 | IPR027417 | - | |
Lele17g0262 | 1155 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 493 | 790 | IPR027417 | - | |
Lele17g0262 | 1155 | Pfam | HIRAN domain | 293 | 382 | IPR014905 | GO:0003676|GO:0008270|GO:0016818 | |
Lele17g0262 | 1155 | MobiDBLite | consensus disorder prediction | 443 | 478 | - | - | |
Lele17g0262 | 1155 | FunFam | DNA repair protein RAD5B | 562 | 791 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Lele17g0262 | Lele-ChrLele17 | 14838564 | 14844791 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Lele17g0262 | 269 | 1154 | RAD5 or RAD16-like Gene Family | AT5G43530 | 64.009 | 0.0 | 1209 |