Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele17g0249 ATGCCCTATTACTCCATCAGGGACCAGGAAAGGAGACTATCTGTGTCAGATGAAAGAGTTAGAGTGGAGAGAACAAAATCTTATGTCTCGCAATATCGGATTGGGGATGAATTTTTAAATAGAGATACTGCTCAGAGCGGGAGACCAAGGGATAATCTTGCTGAAAGAGAGAAATTGGATGAAGGATTGAAGAATGAAGTTGTTGAGAAATCTTCCAGCAATACGAAGTTAAGTAAAAAATTTGATAGCAAAACACCAGGACACATACCTAGAAATGAGATAATCGAGGTGGGTGAGCAAGAAGATGACAGAGTTAAACATGTTTATTCCAATGAATTGTTCATTGCAAATAGAGGGAAAGAAGAGCATTTGAATGACTTGAGGAATAAGGATAAGTGGCCCAGGATGCTACTCAAGGATGCAAAGTTTGATAAGAGGCATAGCAGCAGTTCTAGTAAACAAAAGGTTGGACAGTTCAATGAAAGTACAAAGAAGAATGTAAAGCGAGAGGAGAGATCACATAGTCGATCAACTAGGGAAAGCTTTGAAAATAGTTACGATAAAAAGCATGGGCATGCTTTGCAGACACCAGCTGATCTAGCTCTTGATGAAGTTGCTGTACAAGCAGTTATACAGAGAAAGGATAAGGTATCGGCAAAGCATCTTTTGCAAGTATTTTGTGATTCACCTTCTCAGGCACGGACAACATTGCTGCCTGAATTGTGGGAGTACTTATTTTCTCCACATCTTTCTCATTTGAAGGCATGGTACAACAGGGAAGTTCATATGCTAGTGGATTGGCCAAGTAGAAGAAGAAAAGTAAAGCATCTTGAAAAAGTGTATAATGAGCATTTGGATTCTGGGACTTATTCATTTGCTGTATACTACAAAGACTGGCTCACTGAAGGAGCAGAAGCTCCATCAGTTCCTTCTATCACCGTTCCATCAATATCTTCTTCAGAAAGTTATCATGGAAGTCCCCTTGGTCATTCTTCTGAATTAGCTTCGTCTGTTGATTCATTCTCACCGCAGCCAATGGTTAGCAAAAACCTGTACGATTCTGTCTTTGGTAGCTCGAGTAAAGCTGGAACTGAAGAAGAGGAAGATAATGCCGTAGAAGATGAAGTTACTGAAGAAGATTCTAAGAAGATGACGCTAGCTATTGAGCTCCATACTAAAGGAACCCCAATGATAGATGGACAACAATGGCAAGGGAAGAGTGTCAGTGATGATATTGCTAACTCTTCCACACGTGTAAAAAGCAACATGCTAGATGATCTCCCACGTGAAAGAACAGATGAAGTCACTCTTAGCAAGGTGACAGGATCTGTTTCAGGAATGCAAGATGCCAAAAGGCGTTTTGATCCCATTGTGTCTACTGGTTCACTGTCCAGCGAGGAATCAGTCTCCAACTCTGTTATAAATGAGTTCATTTGTCCTTTGACTGGAACTTTATTTGAGGAACCAACTACCCTTGAGACTGGTCAAACCTTTGAACGAGCAGCCATCAAATCCTGGTTTGAAAAGGGAAACAGAACTTGCCCGGTGTCTGGAAATAGTTTAGATTGTGTTGCCATGCCATTAACTAACCTTGTTTTGAAGCGTTTGATTGATAATTGGAAGTCAGAACAATTTAGTCGCATACTGGATTTTGCTTCTGAAATTGCGGACAAAGAAAGCCATAAGCTGAAACATGATGAGTCTGCTGTTTCTAATTTAGAGAGTCTCTTCACTTCATTGAATGGAGTAAACGAAAGAAATTATGTCAAACAACTCGTCTCTATAGGGCTTCTGTCATTTCTTTTTAGGAGGTTTGAATTGGGAAATGTGGAAGAGAAAACACATGTAGTTGCACTCTTGCTAAATTGTAGTGAAGATGATTCTAGTTGCATATATCAGATCGCAAGGAACATTAACAAAAAATGTCTTCTAGAGCTTCTTTGCAGTAAGGATGCTGCCCCAAGAACAAGTGCAATTTCGTTACTTACTGAATTATGTTCTCTTAAAAGGTGA 2013 0.3979 MPYYSIRDQERRLSVSDERVRVERTKSYVSQYRIGDEFLNRDTAQSGRPRDNLAEREKLDEGLKNEVVEKSSSNTKLSKKFDSKTPGHIPRNEIIEVGEQEDDRVKHVYSNELFIANRGKEEHLNDLRNKDKWPRMLLKDAKFDKRHSSSSSKQKVGQFNESTKKNVKREERSHSRSTRESFENSYDKKHGHALQTPADLALDEVAVQAVIQRKDKVSAKHLLQVFCDSPSQARTTLLPELWEYLFSPHLSHLKAWYNREVHMLVDWPSRRRKVKHLEKVYNEHLDSGTYSFAVYYKDWLTEGAEAPSVPSITVPSISSSESYHGSPLGHSSELASSVDSFSPQPMVSKNLYDSVFGSSSKAGTEEEEDNAVEDEVTEEDSKKMTLAIELHTKGTPMIDGQQWQGKSVSDDIANSSTRVKSNMLDDLPRERTDEVTLSKVTGSVSGMQDAKRRFDPIVSTGSLSSEESVSNSVINEFICPLTGTLFEEPTTLETGQTFERAAIKSWFEKGNRTCPVSGNSLDCVAMPLTNLVLKRLIDNWKSEQFSRILDFASEIADKESHKLKHDESAVSNLESLFTSLNGVNERNYVKQLVSIGLLSFLFRRFELGNVEEKTHVVALLLNCSEDDSSCIYQIARNINKKCLLELLCSKDAAPRTSAISLLTELCSLKR 670
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele17g0249 670 Pfam U-box domain 475 544 IPR003613 GO:0004842|GO:0016567
Lele17g0249 670 MobiDBLite consensus disorder prediction 142 191 - -
Lele17g0249 670 MobiDBLite consensus disorder prediction 162 191 - -
Lele17g0249 670 PANTHER OS04G0584500 PROTEIN 210 395 - -
Lele17g0249 670 CDD RING-Ubox_PUB 477 518 IPR045210 -
Lele17g0249 670 SUPERFAMILY RING/U-box 461 543 - -
Lele17g0249 670 MobiDBLite consensus disorder prediction 311 340 - -
Lele17g0249 670 SMART Ubox_2 476 540 IPR003613 GO:0004842|GO:0016567
Lele17g0249 670 MobiDBLite consensus disorder prediction 308 340 - -
Lele17g0249 670 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 457 549 IPR013083 -
Lele17g0249 670 ProSiteProfiles U-box domain profile. 472 547 IPR003613 GO:0004842|GO:0016567
Lele17g0249 670 MobiDBLite consensus disorder prediction 358 381 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele17g0249 Lele-ChrLele17 14744939 14747889 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele17g0249 444 540 U-box Gene Family AT5G42340 30.928 7.54e-12 66.6