Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele17g0226 ATGATTTGGACGTGTAACTTTACTCTTGATGTTCCAGTTGGACCTATGCTGTCTAAAGCAACTAAGGGTGTATCTGAAGTTCTAAATAAATTCCAGGATATAGAGTTTACTTGTGAATACAAATATGATGGAGAGCTTGCCCAGATACATTACATGGATGATGGATCAGTTCATATTTACAGTAGAAATGCTGAAAAGAACACTACAAAGTTTCCTGATGTTGTTGCTGCTATTTCATGAACTCGAGCTCGAAAACATGTTTTTATGAGTGATATTAAAGTCAATGTATGCATATTTGCCTTTGGAGCTCTTGAATGCAATGCCTTCAATAATGCAAATCTTTTTGTTATCACTTGTGTGGTTGAGGGTAAGGGGGTGTGGGAGGTGAAAGCAGCAGACTTGACCAGTAGCCCGGTTCAACGTGCCGCAATAGGCATAGTGGATTCGAATAAGGGCATATCACTTCGGTTCCCTCGTCTAGTTCGAGTTCGGGATGATAAAGCTCCTGAACAAGGCTCATCATCTGAGATGGTTGCTGAAATGCAAGCGAGTAAGCATATGGAGGAGGAGAAGAAAGAGGATATGCAGAGGAATAAAGAAGTGCGGTACCGCGGGGTCCGTCGGCGGCCGTGGGGGAAGTTTGCGGCGGAGATAAGGGACCCGACAAAGCAAGGGGCAAGGCTGTGGCTGGGGACATTTGAGACAGCTGAAGAAGCAGCAAGAGCTTATGACCAAGCAGCTTACAACTTTAGAGGACAGCTTGCAGTTCTTAATTTCCCCGAACACTTCAATCTTCCTCCGCCGCCGCCATATCAACCGTTCTATTCTTCTTCTTCACCGTCTTCTTCTTATGGAGCTGGAGACATTACTGCAAGTTCCTCAACAAGTACTGCTGAAGGACAGCACTTGCAAAGGGAAGTTATTGAGTTTGAGTGTTTGGATGATAAGATATTGGAAGATCTTCTTGAATCTCAAGAGAAGAACAATAAAAAACAAGATTGA 1002 0.4361 MIWTCNFTLDVPVGPMLSKATKGVSEVLNKFQDIEFTCEYKYDGELAQIHYMDDGSVHIYSRNAEKNTTKFPDVVAAISXTRARKHVFMSDIKVNVCIFAFGALECNAFNNANLFVITCVVEGKGVWEVKAADLTSSPVQRAAIGIVDSNKGISLRFPRLVRVRDDKAPEQGSSSEMVAEMQASKHMEEEKKEDMQRNKEVRYRGVRRRPWGKFAAEIRDPTKQGARLWLGTFETAEEAARAYDQAAYNFRGQLAVLNFPEHFNLPPPPPYQPFYSSSSPSSSYGAGDITASSSTSTAEGQHLQREVIEFECLDDKILEDLLESQEKNNKKQD 333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele17g0226 333 ProSiteProfiles AP2/ERF domain profile. 202 260 IPR001471 GO:0003700|GO:0006355
Lele17g0226 333 PANTHER DNA LIGASE 1/3 FAMILY MEMBER 120 193 - -
Lele17g0226 333 SMART rav1_2 202 266 IPR001471 GO:0003700|GO:0006355
Lele17g0226 333 CDD AP2 202 262 IPR001471 GO:0003700|GO:0006355
Lele17g0226 333 Gene3D DNA ligase/mRNA capping enzyme 12 81 - -
Lele17g0226 333 Gene3D AP2/ERF domain 201 262 IPR036955 GO:0003700|GO:0006355
Lele17g0226 333 Coils Coil 178 198 - -
Lele17g0226 333 FunFam Ethylene-responsive transcription factor 2 201 261 - -
Lele17g0226 333 Pfam ATP dependent DNA ligase domain 15 84 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Lele17g0226 333 SUPERFAMILY Nucleic acid-binding proteins 120 182 IPR012340 -
Lele17g0226 333 Gene3D - 103 198 IPR012340 -
Lele17g0226 333 PRINTS Ethylene responsive element binding protein signature 226 242 IPR001471 GO:0003700|GO:0006355
Lele17g0226 333 PRINTS Ethylene responsive element binding protein signature 203 214 IPR001471 GO:0003700|GO:0006355
Lele17g0226 333 SUPERFAMILY DNA ligase/mRNA capping enzyme, catalytic domain 8 111 - -
Lele17g0226 333 Pfam AP2 domain 202 252 IPR001471 GO:0003700|GO:0006355
Lele17g0226 333 MobiDBLite consensus disorder prediction 276 302 - -
Lele17g0226 333 SUPERFAMILY DNA-binding domain 202 261 IPR016177 GO:0003677
Lele17g0226 333 MobiDBLite consensus disorder prediction 266 302 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele17g0226 Lele-ChrLele17 14443267 14448817 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele17g0226 198 327 AP2-EREBP Transcription Factor Family AT3G23230 58.462 9.59e-43 143
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Lele17g0226 DNA_ligase_A_M 3e-15 CL0078