Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele17g0113 ATGATTATGTGGTGCTCGCTCTGCCCACTAGGTCGCACTCTTTACAGGTTTTCAGAGATGGAGTCTCTTGGTTTTGTGGATGACCTCCTGAATTTCTCATCTGACGTAGGTGAAGAAGATGATGAGGAAGATAAACCCAGGAAAGCCCTGTCTTCTCTTAGCCTTAAATGTAGTGATGCAGCATCATTAAATGCTTTGGATGTAGATGACCCAACCCGTTCATTTTCTAGCCATTGCTCTTGCGAGCATGTTCCTATCCATGTCAACGAAAGCCTTCAACCAGCAGAACAGTTATGTAGATCTTCAATAGGCCTATGCATGCAGGTTGTTGTTTGACCATCATTAGAAAAGGGGAAAAGAAAACATATTGGATATCAGATAAATGAAGATGAAGAAGACAGTGGATTGTTTCTCATGACCAGATCAACGCTTTCAATGCTTGTGATTTCAAACCTGTGGCTACCTTGTGTCCAATTCAATTGTTCCATTGTTGCTGCTGCCTTATTAATGTTGGAGTTTGCGGAAGAAGAGCTCGAATGGCTATCCAACAAAGATGCTTTCCCGGCTGTCGAAACATTTGTTGACATGCTCTCTATTCAACCAAACTTATCGAAGCCCCAAACCCCAGTCTCAACACTTGCATACAGTGCAAGTAGTATCAACAGTAATAACAGTGCTAACAGTGTTACCCTCTTAAATGGCTTTAATCACGTGAAGGTTCCTGTCCGAGCACGAAGCAAGCGTCGTAATAGGCAACCCCGTGCTGTTTCTGACATATCCAGCTGGCAGTTTTGGTGGAACCAGCCGAGTAACACGATTACCAAACCAGAAGCAATCATAACAGTCTCAGTAATAGGGAGGAAATGCCAGCACTGCGGGGTAGAAAAAACTCCACAGTGGCGGGCAGGACCCCTTGGGCCAAAAACCCTATGCAATGCATGTGGGGTTAGGTATAAGTCTGGTCGACTTTTGCCGGAATACCGCCCTGCAAATAGCCCTACATTTCGTAGTGAATTGCATTCAAATTCCCACAGGAAGGTAGTTGAGATGAGAAAGCAAAAGCAAATGGATAGCCAGGGATGA 1083 0.4451 MIMWCSLCPLGRTLYRFSEMESLGFVDDLLNFSSDVGEEDDEEDKPRKALSSLSLKCSDAASLNALDVDDPTRSFSSHCSCEHVPIHVNESLQPAEQLCRSSIGLCMQVVVXPSLEKGKRKHIGYQINEDEEDSGLFLMTRSTLSMLVISNLWLPCVQFNCSIVAAALLMLEFAEEELEWLSNKDAFPAVETFVDMLSIQPNLSKPQTPVSTLAYSASSINSNNSANSVTLLNGFNHVKVPVRARSKRRNRQPRAVSDISSWQFWWNQPSNTITKPEAIITVSVIGRKCQHCGVEKTPQWRAGPLGPKTLCNACGVRYKSGRLLPEYRPANSPTFRSELHSNSHRKVVEMRKQKQMDSQG 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele17g0113 360 SMART GATA_3 283 337 IPR000679 GO:0006355|GO:0043565
Lele17g0113 360 Pfam GATA zinc finger 289 323 IPR000679 GO:0006355|GO:0043565
Lele17g0113 360 CDD ZnF_GATA 288 336 IPR000679 GO:0006355|GO:0043565
Lele17g0113 360 Gene3D - 285 359 IPR013088 GO:0006355|GO:0008270
Lele17g0113 360 ProSiteProfiles GATA-type zinc finger domain profile. 283 319 IPR000679 GO:0006355|GO:0043565
Lele17g0113 360 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 286 346 - -
Lele17g0113 360 Coils Coil 164 184 - -
Lele17g0113 360 ProSitePatterns GATA-type zinc finger domain. 289 314 IPR000679 GO:0006355|GO:0043565
Lele17g0113 360 FunFam GATA transcription factor 281 360 - -
Lele17g0113 360 PANTHER GATA TRANSCRIPTION FACTOR 26 357 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele17g0113 Lele-ChrLele17 12795369 12799910 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele17g0113 175 355 C2C2-Gata Transcription Factor Family AT3G24050 46.667 1.25e-47 160
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Lele17g0113 GATA 1.2e-16 CL0167