Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele17g0100 ATGACTGCCATTGGAGAAATGGCTGATGGAAGTTGGCATAGGGCAAGCAAAGGGGCTCCCGAGCAGGGCCTTAGGGGAGAAGAGAAGAAGAAGGTCCATTCTATCATTAAATTGTTTGCAGATAGAGGGCTTCGTTCGCTTGCTGTTGCTAGACAGGAAGTGCCTGAGAAAACTAAAGAAAGTTCCGGTGGTCCATGGCAATTTTATGGCTTGTTGCCACTATTCGATCCCATTAGGCATGATAGCGCTGAGACCATTCAAGGAATTCTTAATCTTGGTGTAAACGTCAAGATGATTACTGGCGATCAACTTGCCATAGCTAAGGAGATTGGTGGGAGACTCGGAATGGGAACGAATATGTGTCCATTTGCTTCTTCGCTTGGTCAAGACATAGATGAAAATATCGCCGCACTTCCTGTAGAAGGGCTGATCGAGAAGGTTGATGGATTTGCTGGACTATTTCCTGAGCACAAATATGAAATTGTGAAGAAGTTGCAAGAAAGGAAGCATATTTGTGGAATGATTGGAAATGGTGTCAATGATTTACCTGCCTTGAAGAAGGCCAATATTGGAATTGCCACTCCTGATGCTACTGATGCTGCAAGAAGTGCTTCTGACATTGTCCTAACAGAACCTGGATTGAGTATTTATGCGGTTTCTATCACTATCAGTATGGTGTTTTGCTTCATGTTTATTGCACTGTTATGGAAATTTGACTTCTCTCCTTTCATGGCTTTGATTATTGCCATTCTTAATAATGGAACAGTCATAACAATTACAAAGGACAGAGTTAAGCCATCTCCCCTGCCTGATAAATGGAAACTCAAAGAAATATTTACTACTGGAGTTCGCATTTTGGGCATCAAAACCATTAATCACAGTCCGTATGAAATAATGGCAGCCTTGTTTCTTCAAATCAGTATAATGAGCCAGGCTCTAATTTTTGCAACCCGTTCTCGCAGTTGGTCGTTTGAACTCCCTGGATTACGATTAGTGACTGCTTTCATTATTTCTCAACTGATTGCAACATTAATTGCAGTATATGCTTACTACTGGGGCTTTGCAAGGATAGCAGGGGTTGGTTGGGGTTGGGCTACGGCTATTTGGCTATACAATATTATCTTCTATGTTCCACTTGACTTAATGAAGTTTTCTATCCATTACATCTTAAGTGGCAAGGCTAGGCTAAATATGCTAGAAAACAAGAAAATATATATGGACCAAAGGAGTAAACTGGAACAAGTGGCAAAACTGGATAGTGCAGACACAGAGTTTCTAACATACAAGATGGATAAGTTTCTGAATGATATGAGTAGAGAGAAGCCAATCAGATTCACCTCCCAACACTTGATGCTTGCAACTTACAACTACTCCTACAAGCTCGGACCAGAATTGAGACCCACAATGAGTGGTGTGGCCAAAATGTTGGAGGGTTTGATGGATATTCCATACCCTTTGAACCCTTTTCAACACATGATAGATCAAGGTCAACCTATTGATACACAACGAAGTGATACTGTTATTGATTTTAGTTCTTCTCTTGAAGTAACCAAATCAGCCATTGATCATTCTAGGCCTATCACAAGAATGCATGAGATCGAAATAGACATGAGTTAA 1617 0.4088 MTAIGEMADGSWHRASKGAPEQGLRGEEKKKVHSIIKLFADRGLRSLAVARQEVPEKTKESSGGPWQFYGLLPLFDPIRHDSAETIQGILNLGVNVKMITGDQLAIAKEIGGRLGMGTNMCPFASSLGQDIDENIAALPVEGLIEKVDGFAGLFPEHKYEIVKKLQERKHICGMIGNGVNDLPALKKANIGIATPDATDAARSASDIVLTEPGLSIYAVSITISMVFCFMFIALLWKFDFSPFMALIIAILNNGTVITITKDRVKPSPLPDKWKLKEIFTTGVRILGIKTINHSPYEIMAALFLQISIMSQALIFATRSRSWSFELPGLRLVTAFIISQLIATLIAVYAYYWGFARIAGVGWGWATAIWLYNIIFYVPLDLMKFSIHYILSGKARLNMLENKKIYMDQRSKLEQVAKLDSADTEFLTYKMDKFLNDMSREKPIRFTSQHLMLATYNYSYKLGPELRPTMSGVAKMLEGLMDIPYPLNPFQHMIDQGQPIDTQRSDTVIDFSSSLEVTKSAIDHSRPITRMHEIEIDMS 538
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele17g0100 538 Gene3D - 6 75 IPR023299 GO:0000166
Lele17g0100 538 MobiDBLite consensus disorder prediction 1 28 - -
Lele17g0100 538 Pfam haloacid dehalogenase-like hydrolase 70 189 - -
Lele17g0100 538 FunFam Plasma membrane ATPase 69 224 - -
Lele17g0100 538 PRINTS P-type cation-transporting ATPase superfamily signature 70 81 - -
Lele17g0100 538 PRINTS P-type cation-transporting ATPase superfamily signature 175 194 - -
Lele17g0100 538 PRINTS P-type cation-transporting ATPase superfamily signature 92 102 - -
Lele17g0100 538 PRINTS P-type cation-transporting ATPase superfamily signature 198 210 - -
Lele17g0100 538 SUPERFAMILY Calcium ATPase, transmembrane domain M 216 389 IPR023298 -
Lele17g0100 538 SUPERFAMILY HAD-like 67 217 IPR036412 -
Lele17g0100 538 PRINTS H+-transporting ATPase (proton pump) signature 175 191 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Lele17g0100 538 PRINTS H+-transporting ATPase (proton pump) signature 147 163 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Lele17g0100 538 PRINTS H+-transporting ATPase (proton pump) signature 206 231 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Lele17g0100 538 PRINTS H+-transporting ATPase (proton pump) signature 32 50 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Lele17g0100 538 Gene3D - 213 357 - -
Lele17g0100 538 Gene3D - 76 212 IPR023214 -
Lele17g0100 538 PANTHER CALCIUM-TRANSPORTING ATPASE 4 413 - -
Lele17g0100 538 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 2 81 IPR023299 GO:0000166
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele17g0100 Lele-ChrLele17 12517543 12522176 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele17g0100 8 409 Primary Pumps ATPases AT1G80660 62.832 0.0 562