LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele17g0094	ATGGCTTTGCCAGAATGCTCGGCGGCACAACTGGCCCAATTATTTGGCGCCAACACAACCAATGCCGGCGCCGCCGCTAACTTCATCTGTGACAGATTCACCGCTGTCACCAACAAGTTCTCCGACACCGCCTTCGCCGTTGACAGCACCTATCTCCTCAACTCTGCTTACCTCGTTTTCTCCATGCAACTTGGCTTCGCCATGCTCTGCGCCGGCTCCGTTCGCGCCAAGAACAGTATGAACATCATGCTTACCAACGTCCTCGACGCCGCCACAGGTGGTCTCTTCTACTACCTCTTTGGTTTCGCTTTTGCCTTCGGAACTCCCTCCAATGGTTTCATTGGCCGCCACTTCTTCGCTCTTAAAGATGTCCCAGATACAAACTTTGACTACAGCTACTTCCTGTATCAGTGGGCTTTCGCCATCGCCGCCGCCGGAATTACCAGCGGCTCCATCGCTGAGAGAACTCAGTTCGTGGCGTATCTCATCTACTCATCGTTCTTAACAGGCTTTGTTTATCCCGTCGTTTCTCACTGGTTCTGGTCCGTTGACGGTTGGGCAAGTCCAAACAACTTATCCAACTTACTTTTTGGTACCGGAGTGATAGATTTCGCGGGCTCCGGTGTGGTTCACCTCGTCGGTGGTATCGCTGGTCTCTGGGGTGCTTTCATCGAAGGTCCCAGAATTGGCAGATTCGATCATACGGGTCGACCCATAGCTCTTCGTGGACACAGTGCTACTCTCGTCGTTCTCGGAACTTTCTTGCTCTGGTTTGGATGGTACGGATTCAATCCAGGTTCCTTCACAAAGATTCTCAACGCTTACGAATCGGGGAATTACTACGGCCAGTGGAGTGCGGTGGGTCGAACCGCCGTGACAACCACACTAGCTGGTTGCTCCGCAGCATTAACCACTCTCTTTGGCAAGCGGATCCTCTCCGGCCACTGGAACGTGACAGACGTCTGCAATGGTTTGCTCGGTGGATTCGCTGCCATCACCGCCGGGTGCTCCGTCGTGGAGCCATGGGCCGCGATTATTTGTGGGGTCGTGGCAGCGATGGTTTTGATCAGTTGCAACAAGCTGGCGGAGAAGATGAGGTTCGACGACCCACTGGAGGCGGCGCAACTGCACGGCGGCTGCGGCGCGTGGGGGATAATCTTCACGGCGTTGTTCGCCAAGGGGGAGTATGTGGATCAGGTGTACCCGGGTAAAGCGGGTCGGCCACACGGGTTGTTCATGGGAGGTGGAGGGAGGCTATTAGGCGCTCACGTGATCCAGATCCTGGTGATAGTCGGGTGGGTCAGCGCCACCATGGGTACACTGTTCTTCATTCTTCATAAACTAAAACTATTACGGATCTCAGCCGAGGACGAGTTAGCGGGTATGGATCTGACCCGACATGGAGGATTTGGTTACGTGTATGAAGACGATTCACATAAACATGGGATTCAATTGAAAAAAATCGAACCGAATGCCACCGCTCCGTCTCCCCCAATAGAATTGTAA	1506	0.5385	MALPECSAAQLAQLFGANTTNAGAAANFICDRFTAVTNKFSDTAFAVDSTYLLNSAYLVFSMQLGFAMLCAGSVRAKNSMNIMLTNVLDAATGGLFYYLFGFAFAFGTPSNGFIGRHFFALKDVPDTNFDYSYFLYQWAFAIAAAGITSGSIAERTQFVAYLIYSSFLTGFVYPVVSHWFWSVDGWASPNNLSNLLFGTGVIDFAGSGVVHLVGGIAGLWGAFIEGPRIGRFDHTGRPIALRGHSATLVVLGTFLLWFGWYGFNPGSFTKILNAYESGNYYGQWSAVGRTAVTTTLAGCSAALTTLFGKRILSGHWNVTDVCNGLLGGFAAITAGCSVVEPWAAIICGVVAAMVLISCNKLAEKMRFDDPLEAAQLHGGCGAWGIIFTALFAKGEYVDQVYPGKAGRPHGLFMGGGGRLLGAHVIQILVIVGWVSATMGTLFFILHKLKLLRISAEDELAGMDLTRHGGFGYVYEDDSHKHGIQLKKIEPNATAPSPPIEL	501

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lele17g0094	501	TIGRFAM	amt: ammonium transporter	48	472	IPR001905	GO:0008519\|GO:0016020\|GO:0072488
	Lele17g0094	501	Gene3D	Ammonium transporter AmtB like domains	27	492	IPR029020	-
	Lele17g0094	501	SUPERFAMILY	Ammonium transporter	47	453	-	-
	Lele17g0094	501	FunFam	Ammonium transporter	29	487	-	-
	Lele17g0094	501	Pfam	Ammonium Transporter Family	51	472	IPR024041	GO:0008519\|GO:0016020\|GO:0072488
	Lele17g0094	501	ProSitePatterns	Ammonium transporters signature.	203	228	IPR018047	GO:0008519\|GO:0016020\|GO:0072488
	Lele17g0094	501	PANTHER	AMMONIUM TRANSPORTER	27	468	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele17g0094	Lele-ChrLele17	12436882	12438387	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lele17g0094	5	496	Inorganic Solute Cotransporters	AT4G13510	79.757	0.0	806